Occurrences: |
view occurrences
id |
0000cfb9-8da6-4268-8a6f-d0709ad59d05
|
scientificName |
Pyura herdmani
|
AphiaID |
251268
|
eventDate |
2021-12-07
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S28
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCACGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
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"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
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"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"confidence": 1
},
{
"method": "VSEARCH",
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},
{
"method": "VSEARCH",
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},
{
"method": "VSEARCH",
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},
{
"method": "VSEARCH",
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},
{
"method": "VSEARCH",
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}
]
}
|
organismQuantity |
34.0
|
id |
1b6fd836-2183-4eda-b48c-9627119e205a
|
scientificName |
Pyura herdmani
|
AphiaID |
251268
|
eventDate |
2021-12-07
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S30
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCACGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pyura_sp.",
"accession": "JF961822.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
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"accession": "JF961805.1.1702_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Pyura_praeputialis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251292",
"accession": "JF961807.1.1702_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961796.1.1702_U",
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},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961801.1.1702_U",
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}
]
}
|
organismQuantity |
2.0
|
id |
58f4c845-1711-4ae5-a1f9-1ac2ce763440
|
scientificName |
Pyura herdmani
|
AphiaID |
251268
|
eventDate |
2021-12-07
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S29
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCACGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pyura_sp.",
"accession": "JF961822.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961805.1.1702_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Pyura_praeputialis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251292",
"accession": "JF961807.1.1702_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961796.1.1702_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"accession": "JF961801.1.1702_U",
"identity": 1,
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}
]
}
|
organismQuantity |
2.0
|
id |
764b21b0-b6c6-4c21-bb9c-bb94c78c8c4e
|
scientificName |
Pyura herdmani
|
AphiaID |
251268
|
eventDate |
2021-12-07
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S32
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCACGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura herdmani",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251268",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pyura_sp.",
"accession": "JF961822.1.1702_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pyura_herdmani",
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"accession": "JF961805.1.1702_U",
"identity": 1,
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},
{
"method": "VSEARCH",
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},
{
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},
{
"method": "VSEARCH",
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}
]
}
|
organismQuantity |
1.0
|
id |
3fb8d3f6-3e11-4865-a17e-7bc2efd21f37
|
scientificName |
Pyura
|
eventDate |
2021-12-07
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S30
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCACGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGCTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
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"scientificName": "Pyura",
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"confidence": 0.96
},
{
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},
{
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{
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{
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},
{
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]
}
|
organismQuantity |
6.0
|
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