Occurrences: |
view occurrences
id |
b234b63d-70bc-4c84-9682-629e20a21077
|
scientificName |
Chaetoceros
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-197
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2770.0
|
id |
77aa0806-86bc-4940-a343-b9cffec31e36
|
scientificName |
Chaetoceros
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-198
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2551.0
|
id |
2e93e404-13c0-4459-bb79-910b1cf3be66
|
scientificName |
Chaetoceros
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-196
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2529.0
|
id |
9dc10c5e-9bb4-46ac-95e8-2cd005c32170
|
scientificName |
Chaetoceros
|
eventDate |
2024-02-28
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-194
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1913.0
|
id |
d348d02b-24a8-4d0c-9c53-b0892237ed46
|
scientificName |
Chaetoceros
|
eventDate |
2024-02-28
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-193
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1902.0
|
id |
813fb117-e43c-467e-b672-268680d125ef
|
scientificName |
Chaetoceros
|
eventDate |
2024-02-28
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-195
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1810.0
|
id |
005793cc-2cf8-4e01-8514-16f298a1c255
|
scientificName |
Chaetoceros
|
eventDate |
2024-02-28
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-93
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
45.0
|
id |
4c5405ac-2116-466a-867e-b9279386ac05
|
scientificName |
Chaetoceros
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-94
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
28.0
|
id |
4e9e38f6-c393-4c09-bb2d-3b0d480c2dff
|
scientificName |
Chaetoceros
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-96
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
4.0
|
id |
a17bfc02-36b2-4229-962e-3d0d46b33766
|
scientificName |
Chaetoceros
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-200
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
b6f046d3-4216-4598-b317-4822b7dddb0d
|
scientificName |
Chaetoceros
|
eventDate |
2024-02-28
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-92
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
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id |
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scientificName |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTCATGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTCATGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTCATGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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id |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTCATGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTCATGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTCATGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
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identificationRemarks |
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"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"confidence": 0.8
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
24.0
|
id |
301e97d7-36fd-441b-9dce-612f3425948a
|
scientificName |
Chaetoceros decipiens
|
AphiaID |
149126
|
eventDate |
2024-02-28
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-92
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTCATGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"confidence": 0.8
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
|