| Occurrences: |
view occurrences
| id |
0098192a-9f73-4436-97ec-ed96eaaadee0
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-65
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTCGAGATAATGATTAAGAGGGACAGACGGGGGCATCCGTACTGCGGCGTGAGAGGTGAAATTCTTGGACCGCCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Syllis_ypsiloides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:762353",
"accession": "JF903673.1.1895_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "JF903660.1.1868_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_garciai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131431",
"accession": "EF123869.1.1873_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Haplosyllis_sp.",
"accession": "JF903607.1.1860_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
28.0
|
| id |
14b99287-f71d-420d-9e68-69cdf8928099
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-64
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTCGAGATAATGATTAAGAGGGACAGACGGGGGCATCCGTACTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_armillaris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156681",
"accession": "AF474292.1.1823_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_ypsiloides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:762353",
"accession": "JF903673.1.1895_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "JF903660.1.1868_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sphaerosyllis_bardukaciculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389241",
"accession": "EF123842.1.1775_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
13.0
|
| id |
a6dbefbc-727f-4ec7-a190-4340933d2806
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-65
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTCGAGATAATGATTAAGAGGGACAGACGGGGGCATCCGTACTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_armillaris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156681",
"accession": "AF474292.1.1823_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_ypsiloides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:762353",
"accession": "JF903673.1.1895_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "JF903660.1.1868_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sphaerosyllis_bardukaciculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389241",
"accession": "EF123842.1.1775_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
9.0
|
| id |
13ae5155-7f45-497a-a570-265a693b0ef3
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-65
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGTAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGCTCGCCGGCCGCGCGGTCTCGCAGGTTATCTAGGCACTGTCCGCCTGCGGTGCACTGCCGTCGGCGCCCAACCGGCGGGGGGACCGGCCCTGAACCAGCCGCGTCCTGCTTCACAGGCAGCCGCGGGTGCCCTTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
7.0
|
| id |
8b3cb869-4b9d-4392-a8f6-fd3d102dbb4a
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-64
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTCGAGATAATGATTAAGAGGGACAGACGGGGGCATCCGTACTGCGGCGTGAGAGGTGAAATTCTTGGACCGCCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Syllis_ypsiloides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:762353",
"accession": "JF903673.1.1895_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "JF903660.1.1868_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_garciai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131431",
"accession": "EF123869.1.1873_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Haplosyllis_sp.",
"accession": "JF903607.1.1860_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|