Occurrences: |
view occurrences
id |
820ccd39-ae1b-4db8-97fb-83b568d1fe3b
|
scientificName |
Chaetoceros
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S41
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
134.0
|
id |
009de9ec-426c-42c9-b491-0b40fc491994
|
scientificName |
Chaetoceros
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S35
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
99.0
|
id |
39b55809-1182-48ad-bb4b-5128829c8fc9
|
scientificName |
Chaetoceros
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S40
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
78.0
|
id |
4453dfc5-c92c-4141-8e04-07884ddff5bc
|
scientificName |
Chaetoceros
|
eventDate |
2022-06-20
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S50
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
9ce28d76-d88f-4b98-904c-c4d12e815047
|
scientificName |
Chaetoceros
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S61
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
bba8d32c-8fd3-433c-93a7-d4b7d4091afe
|
scientificName |
Chaetoceros
|
eventDate |
2022-06-20
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S56
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
c119b38f-e33a-444d-9c39-a32a08804408
|
scientificName |
Chaetoceros decipiens
|
AphiaID |
149126
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S41
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
5.0
|
id |
f3e0e947-ec7c-437a-9f23-28e8d7691208
|
scientificName |
Chaetoceros decipiens
|
AphiaID |
149126
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S35
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
4.0
|
id |
98068db6-c325-4fb8-b96a-444af7ad23da
|
scientificName |
Chaetoceros decipiens
|
AphiaID |
149126
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S40
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
3.0
|
id |
6a861ca5-014f-48f9-b371-5b9b264db468
|
scientificName |
Chaetoceros decipiens
|
AphiaID |
149126
|
eventDate |
2022-06-20
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S50
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
id |
2f2a6d50-5f26-40f1-86fb-a8c70b0a833c
|
scientificName |
Chaetoceros decipiens
|
AphiaID |
149126
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S41
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTCATGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"confidence": 0.8
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
33.0
|
id |
3768e084-a244-4a9a-9930-0080407b78ab
|
scientificName |
Chaetoceros decipiens
|
AphiaID |
149126
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S40
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTCATGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"confidence": 0.8
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
31.0
|
id |
92e14b30-7944-4d09-9d8c-46a0f1e485f8
|
scientificName |
Chaetoceros decipiens
|
AphiaID |
149126
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S35
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTCATGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"confidence": 0.8
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
31.0
|
id |
d382fb7a-81bb-4825-89a1-f43363194afb
|
scientificName |
Chaetoceros decipiens
|
AphiaID |
149126
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S35
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
|