PacMAN decision support system

Potential detection of Paramphiascella fulvofasciata in Fiji

Description:

Potential detection of Paramphiascella fulvofasciata with confidence medium on 2023-08-15 in material sample USP-24-01-58, marker 18S

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Paramphiascella fulvofasciata
Arthropoda > Copepoda > Harpacticoida > Miraciidae
WoRMS: 115960

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

1611.0

Names:

2

Occurrences:

view occurrences

id	ca015aa4-fdbb-4590-9cb2-80929b4710cc
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-58
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus kawamurai", "scientificNameID": "urn:lsid:marinespecies.org:taxname:549150", "accession": "MN541391.1.1767_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus hawaiiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:1435816", "accession": "MN496456.1.1692_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	1611.0

id	c3e947f8-f4f3-4ce2-9ede-cdba5011607c
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-54
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus kawamurai", "scientificNameID": "urn:lsid:marinespecies.org:taxname:549150", "accession": "MN541391.1.1767_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus hawaiiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:1435816", "accession": "MN496456.1.1692_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	14.0

id	2f4e0cc2-4149-43ce-a0d9-72d3147c0b1d
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-57
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus kawamurai", "scientificNameID": "urn:lsid:marinespecies.org:taxname:549150", "accession": "MN541391.1.1767_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus hawaiiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:1435816", "accession": "MN496456.1.1692_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	c812ebb6-1722-49f6-8d45-fefbf0a8d7bb
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-56
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus kawamurai", "scientificNameID": "urn:lsid:marinespecies.org:taxname:549150", "accession": "MN541391.1.1767_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus hawaiiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:1435816", "accession": "MN496456.1.1692_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	f908735d-46a8-473a-afe4-238ba7dcbbe7
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-49
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus kawamurai", "scientificNameID": "urn:lsid:marinespecies.org:taxname:549150", "accession": "MN541391.1.1767_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Sarsamphiascus hawaiiensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:1435816", "accession": "MN496456.1.1692_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	013b10ef-3d4b-4a28-b065-0494b26eb8b4
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-58
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.86 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.981, "query_cover": 0.9952 } ] }
organismQuantity	56.0

id	b718a65f-576e-41d9-b54b-8f0cad5dc540
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-56
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.86 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.981, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	efefaf25-b895-4f20-a584-edef52c66dba
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-58
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.986, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.976, "query_cover": 0.9952 } ] }
organismQuantity	45.0

id	4f38d601-6bd9-4295-92d8-e0263faac563
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-58
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.9 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.976, "query_cover": 0.9952 } ] }
organismQuantity	9.0

id	6f9d3160-f6f7-42f4-a2fb-5a8320904309
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-49
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.986, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.976, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	d0ebd7a4-f5c3-462d-9ad3-1ce3ab0e8134
scientificName	Paramphiascella fulvofasciata
AphiaID	115960
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-37
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Paramphiascella fulvofasciata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:115960", "accession": "EU380293.1.1808_U", "identity": 0.986, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Amphiascoides atopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:348699", "accession": "KC815328.1.1808_U", "identity": 0.976, "query_cover": 0.9952 } ] }
organismQuantity	1.0

Paramphiascella fulvofasciata in Fiji

Status

Paramphiascella fulvofasciata does not have an offial status in Fiji.

Notes

No notes found.