PacMAN decision support system

Potential detection of Microcosmus squamiger in Fiji

Description:

Potential detection of Microcosmus squamiger with confidence low on 2023-08-15 in material sample USP-24-01-57, marker 18S

Confidence:

low

Risk:

high priority view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Microcosmus squamiger
Chordata > Ascidiacea > Stolidobranchia > Pyuridae
WoRMS: 236666

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

0.995

Reads:

26.0

Names:

4

Priority lists:

Top 25 Marine non-indigenous species for the Pacific region

Occurrences:

view occurrences

id	296bbd89-cbaa-4693-8d4b-95efd54840da
scientificName	Microcosmus
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-57
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103522", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	26.0

id	349f4034-e21b-46d5-a57b-7379f9b6f40e
scientificName	Microcosmus
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-54
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103522", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	9.0

id	6e57bc5f-edc8-4f01-96b3-8dfad3f92a3f
scientificName	Microcosmus
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-48
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103522", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	01665a53-b5e7-4789-b709-c8302814e143
scientificName	Microcosmus
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-55
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103522", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	29c68c62-0426-462b-892c-7b80b8e49576
scientificName	Microcosmus
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-56
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103522", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	8981a790-0bdc-4f52-90b1-3dc9eb9fa323
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-57
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	5223.0

id	2c64f0e7-6023-4abf-9007-44854af00490
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-54
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	3625.0

id	053bf117-2bc4-4be1-9332-1433482ffa2d
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-48
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	550.0

id	fc5d6cbb-82d3-4101-bed4-bd906d889861
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-55
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	514.0

id	25913c07-c113-466d-94b6-2d5a41ae5a25
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-56
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	429.0

id	9666a065-1109-4ac9-bf43-ce3c89e61017
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-50
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	46.0

id	d49b6ba7-ece3-4556-bc48-796e78f227fe
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-58
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	45.0

id	d47b8e32-c715-4c9a-bac7-ff0536cdc91e
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-59
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	43.0

id	663eb371-129f-470b-a298-c5af568e83e7
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-49
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	40.0

id	f4c9c02b-a30e-43e1-81bc-f55b2796764b
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-37
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	4.0

Microcosmus squamiger in Fiji

Status

Microcosmus squamiger does not have an offial status in Fiji.

Notes

No notes found.