Occurrences: |
view occurrences
id |
d6169772-8f51-4a18-8d2b-82c4a7b5d511
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-202
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
67.0
|
id |
c771b12d-997f-4f71-9275-3eed1b12a80d
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-200
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
52.0
|
id |
01db8042-c0ae-43bc-91c4-16f07f038e09
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-201
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
14.0
|
id |
a036c6fd-b4e3-4965-97c6-8e98845962df
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-196
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2.0
|
id |
60abca25-1618-41be-8682-0073ad7c502f
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2024-02-28
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-202
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAAGAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
8.0
|
|