PacMAN decision support system

Potential detection of Styela canopus in Fiji

Description:

Potential detection of Styela canopus with confidence medium on 2023-11-28 in material sample USP-24-01-172, marker COI

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Styela canopus
Chordata > Ascidiacea > Stolidobranchia > Styelidae
WoRMS: 103926

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

0.997

Reads:

30.0

Names:

Occurrences:

view occurrences

id	6125a034-a453-4142-b2d3-aa6d4efc3931
scientificName	Microcosmus curvus
AphiaID	250843
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
eventID	SUVA3_20231128_S3A
materialSampleID	USP-24-01-172
target_gene	COI
DNA_sequence	TTTAGCCGGTAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTACATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGGAGAGATCCTGTTTTATATCAACACTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "accession": "KT693194", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Styela canopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103926", "accession": "MW278578", "identity": 0.997, "query_cover": 0.9968 } ] }
organismQuantity	30.0

id	654c9d9f-9898-49af-9447-964a89239e42
scientificName	Microcosmus curvus
AphiaID	250843
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
eventID	SUVA3_20231128_S2B
materialSampleID	USP-24-01-170
target_gene	COI
DNA_sequence	TTTAGCCGGTAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTACATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGGAGAGATCCTGTTTTATATCAACACTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "accession": "KT693194", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Styela canopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103926", "accession": "MW278578", "identity": 0.997, "query_cover": 0.9968 } ] }
organismQuantity	3.0

id	448f8f14-bd02-4eba-9267-e9da9e60fc1e
scientificName	Microcosmus curvus
AphiaID	250843
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
eventID	SUVA3_20231128_S3C
materialSampleID	USP-24-01-174
target_gene	COI
DNA_sequence	TTTAGCCGGCAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTGCATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGAAGAGATCCTGTTTTATATCAACACTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Styela canopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103926", "accession": "MW278578", "identity": 0.994, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "accession": "KT693194", "identity": 0.993, "query_cover": 0.9968 } ] }
organismQuantity	4.0

id	01dbbf50-fcd6-46e7-9892-c25d39dbd91c
scientificName	Microcosmus curvus
AphiaID	250843
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
eventID	SUVA3_20231128_S2B
materialSampleID	USP-24-01-170
target_gene	COI
DNA_sequence	TTTAGCCGGCAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTGCATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGAAGAGATCCTGTTTTATATCAACACTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Styela canopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103926", "accession": "MW278578", "identity": 0.994, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "accession": "KT693194", "identity": 0.993, "query_cover": 0.9968 } ] }
organismQuantity	3.0

Styela canopus does not have an offial status in Fiji.

No notes found.