| Occurrences: |
view occurrences
| id |
7d7745d5-cbd9-4004-8a08-ca1241d8cbe3
|
| scientificName |
Ostrea equestris
|
| AphiaID |
156924
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| eventID |
SUVA3_20230815_S2B
|
| materialSampleID |
USP-24-01-151
|
| target_gene |
COI
|
| DNA_sequence |
TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317498",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226522",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226523",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640081",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640082",
"identity": 0.997,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
882.0
|
| id |
a6edbbb4-5d93-44f1-b79c-1399f0b1bdda
|
| scientificName |
Ostrea equestris
|
| AphiaID |
156924
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| eventID |
SUVA3_20230815_WA
|
| materialSampleID |
USP-24-01-132
|
| target_gene |
COI
|
| DNA_sequence |
TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317498",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226522",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226523",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640081",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640082",
"identity": 0.997,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
15.0
|
| id |
dc664df9-1696-4da7-926e-67991efb3861
|
| scientificName |
Ostrea equestris
|
| AphiaID |
156924
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| eventID |
SUVA3_20230815_PB
|
| materialSampleID |
USP-24-01-145
|
| target_gene |
COI
|
| DNA_sequence |
TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317498",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226522",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226523",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640081",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640082",
"identity": 0.997,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
5.0
|
| id |
01eea315-612a-4fbc-b02f-67969e0ebefc
|
| scientificName |
Ostrea equestris
|
| AphiaID |
156924
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| eventID |
SUVA3_20230815_S2B
|
| materialSampleID |
USP-24-01-151
|
| target_gene |
COI
|
| DNA_sequence |
TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317496",
"identity": 0.995,
"query_cover": 0.995
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317497",
"identity": 0.995,
"query_cover": 0.995
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317498",
"identity": 0.995,
"query_cover": 0.995
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317500",
"identity": 0.995,
"query_cover": 0.995
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317501",
"identity": 0.995,
"query_cover": 0.995
}
]
}
|
| organismQuantity |
2.0
|
|