Occurrences: |
view occurrences
id |
e4f2ed71-8187-4b21-80fe-b63139db8f4e
|
scientificName |
Subeucalanus
|
eventDate |
2022-06-20
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S56
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTTAAGTTTTGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
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"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Subeucalanus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104173",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus crassus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104544",
"accession": "GU969168.1.1739_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"accession": "GU969188.1.1794_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"accession": "AY192563.1.1612_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus spinifer",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346437",
"accession": "AY335856.1.1041_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus inermis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346435",
"accession": "AY335857.1.1683_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
44.0
|
id |
9a510740-db2a-4995-a63d-42c03889c4f3
|
scientificName |
Subeucalanus crassus
|
AphiaID |
104544
|
eventDate |
2022-06-20
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S56
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCCACAGTCTGAAGTTGGTGTGCTTGCTAGCACTACTGCCTTATAGACTGTAGTTTTGCCAGAGGTGTTAGGGTGCTCTTAATCGAGTGTCCTATCGCACTGGCAGGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Subeucalanus crassus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104544",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus crassus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104544",
"accession": "GU969168.1.1739_U",
"identity": 1,
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}
]
}
|
organismQuantity |
9.0
|
id |
021f78ca-1232-4afa-b4b6-e05178c91eb2
|
scientificName |
Subeucalanus
|
eventDate |
2022-06-20
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S52
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTTAAGTTTTGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Subeucalanus",
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"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus crassus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104544",
"accession": "GU969168.1.1739_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
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"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"accession": "AY192563.1.1612_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus spinifer",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346437",
"accession": "AY335856.1.1041_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus inermis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346435",
"accession": "AY335857.1.1683_U",
"identity": 0.981,
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}
]
}
|
organismQuantity |
5.0
|
id |
82f8b007-1c4f-4f9f-93fb-2877729551eb
|
scientificName |
Subeucalanus
|
eventDate |
2022-06-20
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S60
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTTAAGTTTTGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Subeucalanus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104173",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus crassus",
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},
{
"method": "VSEARCH",
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},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
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"identity": 0.994,
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},
{
"method": "VSEARCH",
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},
{
"method": "VSEARCH",
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"accession": "AY335857.1.1683_U",
"identity": 0.981,
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}
]
}
|
organismQuantity |
1.0
|
id |
c971f222-06e0-4893-9733-ede483e2bd4d
|
scientificName |
Subeucalanus pileatus
|
AphiaID |
104547
|
eventDate |
2022-06-20
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S56
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
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{
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{
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},
{
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{
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{
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{
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}
]
}
|
organismQuantity |
11370.0
|
id |
8e09adb6-b614-4f7a-8eb5-b181b68c839b
|
scientificName |
Subeucalanus pileatus
|
AphiaID |
104547
|
eventDate |
2022-06-20
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S52
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
identificationRemarks |
{
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"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
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{
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{
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{
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{
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}
]
}
|
organismQuantity |
950.0
|
id |
fec044ea-2145-47c6-8a01-64dae228e993
|
scientificName |
Subeucalanus pileatus
|
AphiaID |
104547
|
eventDate |
2022-06-20
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S59
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
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"scientificName": "Subeucalanus pileatus",
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},
{
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},
{
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{
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{
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},
{
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}
]
}
|
organismQuantity |
420.0
|
id |
a5899b0a-df60-40d3-aba9-2aa64dce45bc
|
scientificName |
Subeucalanus pileatus
|
AphiaID |
104547
|
eventDate |
2022-06-20
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S60
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
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"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
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{
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},
{
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{
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{
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{
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}
]
}
|
organismQuantity |
165.0
|
id |
3834138f-664a-4d55-bdf6-7853ebdc9c01
|
scientificName |
Subeucalanus pileatus
|
AphiaID |
104547
|
eventDate |
2022-06-20
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S50
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
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},
{
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},
{
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{
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{
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},
{
"method": "VSEARCH",
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"accession": "AY335857.1.1683_U",
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}
]
}
|
organismQuantity |
18.0
|
id |
2776ad67-5ea4-46ce-89fb-8874dbf5c218
|
scientificName |
Subeucalanus pileatus
|
AphiaID |
104547
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S41
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
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"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
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"confidence": 0.99
},
{
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},
{
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{
"method": "VSEARCH",
"scientificName": "Eucalanus spinifer",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346437",
"accession": "AY335856.1.1041_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus inermis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346435",
"accession": "AY335857.1.1683_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2.0
|
id |
d819b429-4f50-40d5-8407-8014ad656eaa
|
scientificName |
Subeucalanus pileatus
|
AphiaID |
104547
|
eventDate |
2022-06-20
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S67
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"accession": "GU969188.1.1794_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus pileatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104547",
"accession": "AY192563.1.1612_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Subeucalanus crassus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104544",
"accession": "GU969168.1.1739_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus spinifer",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346437",
"accession": "AY335856.1.1041_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eucalanus inermis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:346435",
"accession": "AY335857.1.1683_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
|