| Occurrences: |
view occurrences
| id |
12b9fee1-085c-44f3-a702-d84feaf12381
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-65
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
695.0
|
| id |
41af52de-2c34-4422-a63f-a0450001e2cb
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-33
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
185.0
|
| id |
79b246d9-006c-42c0-88c0-f23f2f60974b
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-34
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
114.0
|
| id |
55346460-3e4e-4a77-b343-dd29dde07cc0
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-29
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
75.0
|
| id |
e784d2fe-aba3-44eb-89cd-660b7dd3ced7
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-30
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
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}
]
}
|
| organismQuantity |
62.0
|
| id |
af823001-459b-4ec2-980a-6ccf5025234e
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-31
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
47.0
|
| id |
27292453-66a3-4852-b633-8cd784757a9c
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-32
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
40.0
|
| id |
022a4259-1446-43bf-8438-d3915fe10e95
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-64
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
27.0
|
| id |
e57a7763-145e-4417-ab15-0dd430997a90
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-46
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
| id |
639b93af-47c6-4ea0-b4cc-59ca524dd24b
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-45
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
7b004c6b-fc4f-4f36-a714-42d44723557b
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-34
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGGTGGCCTGCCTGGTCCACCGCAAGGTGAGTACTGGTCAGCCGCCCTTCCTCTCGAAAGCCCCGACTGCTCTTCACTGTAGTGGTCGGGTAGTTCGGGACGTTTACTTTGAAAGACGAACTAGTGCGAAAGCATTTG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.96
}
]
}
|
| organismQuantity |
1.0
|
|