| Occurrences: |
view occurrences
| id |
0244dc1d-b562-4606-97b2-cf65a3a27760
|
| scientificName |
Serpula vermicularis
|
| AphiaID |
131051
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-78
|
| target_gene |
18S
|
| DNA_sequence |
CCGTTGGTCTCTGTGACTGGTGTAATGATTAAGAGGGACTGCCGGGGGCATTGGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCCAGACCAACAAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Serpula vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Serpula_columbiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:338088",
"accession": "DQ317127.1.1715_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Serpula_vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"accession": "AY395721.1.1715_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Serpula_vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"accession": "DQ140409.1.1708_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
44.0
|
| id |
35606b29-9f37-4739-9a75-9ca53f3ff584
|
| scientificName |
Serpula vermicularis
|
| AphiaID |
131051
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-73
|
| target_gene |
18S
|
| DNA_sequence |
CCGTTGGTCTCTGTGACTGGTGTAATGATTAAGAGGGACTGCCGGGGGCATTGGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCCAGACCAACAAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Serpula vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Serpula_columbiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:338088",
"accession": "DQ317127.1.1715_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Serpula_vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"accession": "AY395721.1.1715_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Serpula_vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"accession": "DQ140409.1.1708_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
b5a5bf11-dc2e-4b16-bc86-dd814bacd08f
|
| scientificName |
Serpula vermicularis
|
| AphiaID |
131051
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-67
|
| target_gene |
18S
|
| DNA_sequence |
CCGTTGGTCTCTGTGACTGGTGTAATGATTAAGAGGGACTGCCGGGGGCATTGGTATGGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCCAGACCAACAAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Serpula vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Serpula_columbiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:338088",
"accession": "DQ317127.1.1715_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Serpula_vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"accession": "AY395721.1.1715_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Serpula_vermicularis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131051",
"accession": "DQ140409.1.1708_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
91a29f0c-eded-43b4-9b63-edc37baf7f4d
|
| scientificName |
Hydroides
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-68
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTATCGTCTCGGTGGTCCTGTTCACGCAGGCACTGCCTTGATGACCTAACCGATGGTTGAACGACTCCGAGTGCCCTTCACTGGGTGCTCGTGGGTGGCCATCGCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hydroides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129566",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_ezoensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131003",
"accession": "EU184062.1.1745_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_minax",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131007",
"accession": "EU184063.1.1735_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_tuberculatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328479",
"accession": "EU184059.1.1740_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_trivesiculosus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328477",
"accession": "EU184060.1.1723_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Hydroides_sanctaecrucis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:333645",
"accession": "EU184061.1.1774_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
|