PacMAN decision support system

Potential detection of Rhizosolenia imbricata in Fiji

Description:

Potential detection of Rhizosolenia imbricata with confidence low on 2022-11-23 in material sample S71, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Rhizosolenia imbricata
Heterokontophyta > Bacillariophyceae > Rhizosoleniales > Rhizosoleniaceae
WoRMS: 149116

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

3.0

Names:

Occurrences:

view occurrences

id	028a850f-996b-4451-ba9d-8c45f0d7ac0c
scientificName	Rhizosolenia
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S71
target_gene	18S
DNA_sequence	TTTGTTGGTTTGTGCACCATGGTAATGATTAAAAGAAACAGTCAGGGGTATTAGTATTCCGTAGTCAGAGGTGAAATTCTTGGATTTGCGGAAGACTCACAACTGCGAAAGCATTTACCAGGGATGTTTTCATTAATCAAGAACGAAAGTTTAGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rhizosolenia", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149069", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AB430589.1.1773_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia pungens", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149117", "accession": "JQ315683.1.1260_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "JQ315685.1.1265_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia imbricata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149116", "accession": "AJ535178.1.1801_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AY485508.1.1721_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	3.0

id	1514766a-2904-46f4-b605-3f6a6c7027ba
scientificName	Rhizosolenia
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S70
target_gene	18S
DNA_sequence	TTTGTTGGTTTGTGCACCATGGTAATGATTAAAAGAAACAGTCAGGGGTATTAGTATTCCGTAGTCAGAGGTGAAATTCTTGGATTTGCGGAAGACTCACAACTGCGAAAGCATTTACCAGGGATGTTTTCATTAATCAAGAACGAAAGTTTAGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rhizosolenia", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149069", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AB430589.1.1773_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia pungens", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149117", "accession": "JQ315683.1.1260_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "JQ315685.1.1265_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia imbricata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149116", "accession": "AJ535178.1.1801_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AY485508.1.1721_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	3.0

id	2a2497cf-5429-494a-a4d4-72302859bf9a
scientificName	Sundstroemia similoides
AphiaID	1590709
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S70
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTTAGAATAGTCGGTCTTGCACTCAGTGTAAGTACCAGACTCTTCTTCCCATCTTTAGGGAGAACTCATATGGCATTAATTTGTTGTGTGATGTATCCTTATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rhizosolenia similoides", "scientificNameID": "urn:lsid:marinespecies.org:taxname:160531", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AB430589.1.1773_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia pungens", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149117", "accession": "JQ315683.1.1260_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "JQ315685.1.1265_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia imbricata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149116", "accession": "AJ535178.1.1801_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AY485508.1.1721_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	3.0

id	e76bb578-2e3d-4abe-b52e-034e79992dd1
scientificName	Sundstroemia similoides
AphiaID	1590709
eventDate	2022-11-23
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S71
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTTAGAATAGTCGGTCTTGCACTCAGTGTAAGTACCAGACTCTTCTTCCCATCTTTAGGGAGAACTCATATGGCATTAATTTGTTGTGTGATGTATCCTTATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rhizosolenia similoides", "scientificNameID": "urn:lsid:marinespecies.org:taxname:160531", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AB430589.1.1773_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia pungens", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149117", "accession": "JQ315683.1.1260_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "JQ315685.1.1265_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia imbricata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149116", "accession": "AJ535178.1.1801_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AY485508.1.1721_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	3.0

Rhizosolenia imbricata in Fiji

Status

Rhizosolenia imbricata does not have an offial status in Fiji.

Notes

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