Occurrences: |
view occurrences
id |
5745bad6-7672-4f87-be95-e69609150f42
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S65
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
7688.0
|
id |
dbb9b7b0-49ef-49c6-9a51-fbe6e6286229
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S63
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
793.0
|
id |
a45a9fb6-4bfe-4936-8b63-0324540d4901
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S46
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
246.0
|
id |
facfffb7-0d55-4023-a374-195e9bb122eb
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S45
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
147.0
|
id |
b732b8b3-9daf-452c-a731-f715b60af8e2
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S65
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTACTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.87
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
77.0
|
id |
31e3989f-3202-40fd-a6ad-5920b9dcf9fe
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S46
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTACTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.87
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
69.0
|
id |
b179141f-a108-473c-9b44-f8b8b32f9588
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S63
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTACTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.87
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
65.0
|
id |
b5e12987-4e25-40cf-8724-a35a8ef0f7b5
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S48
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
26.0
|
id |
c2d2dcb2-ffd6-4bb2-80fe-973c748949fb
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S45
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTACTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.87
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
26.0
|
id |
d0f28588-8bb9-4b63-8638-4a9d43a956cc
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S65
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGGCTCGCCTGAATAATGGTGCATGGAATAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.8
}
]
}
|
organismQuantity |
18.0
|
id |
b1b8cabb-78b2-4d8f-91d4-70d760510122
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S47
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
14.0
|
id |
d16d0f66-d970-4f05-acce-b957a8aab1c2
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S65
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAAAAGTGTATATTTAGTCTGGTGCCAGCAGCCGCGGAAACTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGA
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.85
}
]
}
|
organismQuantity |
4.0
|
id |
0dbb3c0c-2d99-4cce-bd29-a64a5dd93278
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S64
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
2.0
|
id |
029262f9-ee3f-44dc-a543-b49556900c39
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S48
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTACTCCGCCGGTGCCCTTGACTTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCGAAGACGATTAGA
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.81
}
]
}
|
organismQuantity |
1.0
|
id |
083868f2-df2e-42ea-8502-e72293398316
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S48
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTACTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.87
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
id |
388c6542-0bb1-4a51-aa4b-04607aefcea5
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S63
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGGCTCGCCTGAATAATGGTGGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.85
}
]
}
|
organismQuantity |
1.0
|
id |
dfcf04c6-42f2-42cc-825a-415a589d699e
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2022-05-25
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S47
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTACTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.87
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
|