PacMAN decision support system

Potential detection of Obelia bidentata in Fiji

Description:

Potential detection of Obelia bidentata with confidence low on 2023-04-27 in material sample USP-24-01-19, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Obelia bidentata
Cnidaria > Hydrozoa > Leptothecata > Campanulariidae
WoRMS: 117385

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

Reads:

63.0

Names:

Occurrences:

view occurrences

id	02cd3684-3249-4a3c-b74e-b8a4ff2f6012
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-19
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	63.0

id	ccb86d38-9dd5-4f76-9a32-1a263b09b7b7
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-20
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	52.0

id	ede82d7c-adc8-49ef-8b8f-3a18b8a3aa31
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-12
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	7.0

id	519bed89-815c-4fa1-92b6-944cf1091eee
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-18
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	5.0

id	9955e6fa-0cce-4c86-8c8c-8a7cdefade9f
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-17
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	c47f62c6-6cf0-4fda-985c-d03816ce3261
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-13
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	2.0

Obelia bidentata does not have an offial status in Fiji.

No notes found.