| Occurrences: |
view occurrences
| id |
5aa5430f-8df1-47f0-b38c-8d29764a103c
|
| scientificName |
Pectinaria
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S22
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAAGTCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGGGCCGCCAGAGGTGAAATTCTTTAACTGGCTCATGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGGTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pectinaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129437",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pectinaria_gouldii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:334421",
"accession": "DQ790091.1.1778_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pectinaria_koreni",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:234099",
"accession": "JN936463.1.1811_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Marphysa_sanguinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130075",
"accession": "AY040695.1.1748_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pectinaria_regalis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:337522",
"accession": "AY040698.1.1758_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pectinaria_granulata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130593",
"accession": "AY577890.1.1743_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
68.0
|
| id |
02d0a3ed-d250-4a7f-a768-9f4ee7ba528b
|
| scientificName |
Pectinaria
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S21
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAAGTCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGGGCCGCCAGAGGTGAAATTCTTTAACTGGCTCATGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGGTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pectinaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129437",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Pectinaria_gouldii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:334421",
"accession": "DQ790091.1.1778_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pectinaria_koreni",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:234099",
"accession": "JN936463.1.1811_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Marphysa_sanguinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130075",
"accession": "AY040695.1.1748_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pectinaria_regalis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:337522",
"accession": "AY040698.1.1758_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pectinaria_granulata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130593",
"accession": "AY577890.1.1743_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
24.0
|
|