| Occurrences: |
view occurrences
| id |
02d34813-654f-4d8d-9bec-5c41ef23f063
|
| scientificName |
Chaetoceros rostratus
|
| AphiaID |
178201
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S41
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"accession": "X85391.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "HQ869026.1.871_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "AJ535167.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "AY426893.1.820_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "HQ912650.1.1640_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
12.0
|
| id |
5b835170-c34b-4bc8-8347-69cfe252de56
|
| scientificName |
Chaetoceros rostratus
|
| AphiaID |
178201
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S35
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"accession": "X85391.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "HQ869026.1.871_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "AJ535167.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "AY426893.1.820_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "HQ912650.1.1640_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
12.0
|
| id |
33e10958-f811-4ed4-bcbc-3ca566cd7f24
|
| scientificName |
Chaetoceros rostratus
|
| AphiaID |
178201
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S56
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"accession": "X85391.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "HQ869026.1.871_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "AJ535167.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "AY426893.1.820_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "HQ912650.1.1640_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|