Occurrences: |
view occurrences
id |
4649a20f-6c14-4029-a84c-59323c67351f
|
scientificName |
Microcosmus
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S76
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103522",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
8.0
|
id |
3175d123-7fc4-4373-91ec-88392d4156f6
|
scientificName |
Microcosmus
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S73
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103522",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
4.0
|
id |
030a663a-2a23-41ab-a698-0648ebffb6c9
|
scientificName |
Microcosmus
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S70
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103522",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
id |
1bb682f8-b75c-4856-823e-14b44b17d62d
|
scientificName |
Microcosmus
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S71
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103522",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
id |
ac96671e-7d32-4415-b2a5-438d4fc51703
|
scientificName |
Microcosmus exasperatus
|
AphiaID |
103838
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S88
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
43.0
|
id |
55071983-90b3-446d-8eaa-3fddcc9148be
|
scientificName |
Microcosmus exasperatus
|
AphiaID |
103838
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S70
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
36.0
|
id |
416ea620-da2d-46ff-8550-0e84f13aceda
|
scientificName |
Microcosmus exasperatus
|
AphiaID |
103838
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S73
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
27.0
|
id |
cb46b44d-37bb-40c8-8b3a-62e5740e8bc3
|
scientificName |
Microcosmus exasperatus
|
AphiaID |
103838
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S76
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
27.0
|
id |
35641503-d53e-432d-8c9b-480b41ebe8aa
|
scientificName |
Microcosmus exasperatus
|
AphiaID |
103838
|
eventDate |
2022-11-23
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S71
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
3.0
|
|