PacMAN decision support system

Potential detection of Apionsoma (Apionsoma) misakianum in Fiji

Description:

Potential detection of Apionsoma (Apionsoma) misakianum with confidence low on 2022-02-01 in material sample S2, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Apionsoma (Apionsoma) misakianum
Annelida > Sipuncula > Phascolosomatidae
WoRMS: 266492

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

Reads:

2.0

Names:

Occurrences:

view occurrences

id	03bf85ef-c479-4e3d-880e-85d535e102d9
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S2
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	a93a5c0d-2e01-4447-b4b2-6c50d8032166
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S11
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	ac3f2df1-4271-45bb-a887-fa9df725521c
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S7
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGCTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGCGCCGGCGGGTGGTTCGCCTCGCGGCGTTTACTGCCTGCTCGGTCCTACCTATCCTGTTCACTGCGGTTGTGCTCTTGACTGAGTGCCCGCGGCGACTGGACCGTTTACTTTGAAAAAATTAGAGTGCTTAAGGCA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	bc78f808-936c-4ad8-a741-0049c745d875
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S17
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	d4377def-1ba9-4783-8507-c0c5c24c4a28
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S11
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGCTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGCGCCGGCGGGTGGTTCGCCTCGCGGCGTTTACTGCCTGCTCGGTCCTACCTATCCTGTTCACTGCGGTTGTGCTCTTGACTGAGTGCCCGCGGCGACTGGACCGTTTACTTTGAAAAAATTAGAGTGCTTAAGGCA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	1.0

Apionsoma (Apionsoma) misakianum has pest status in Fiji.

No notes found.