Occurrences: |
view occurrences
id |
042fe17d-cbe3-4d83-9fbf-403f724f5b88
|
scientificName |
Callopora lineata
|
AphiaID |
111197
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-59
|
target_gene |
18S
|
DNA_sequence |
GTTGGTTAGAGAGTCGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTAGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACTCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_plumosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111159",
"accession": "JN680951.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "JN680949.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
94.0
|
id |
10461345-e010-46e2-beaf-0c28f35054ec
|
scientificName |
Callopora lineata
|
AphiaID |
111197
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-55
|
target_gene |
18S
|
DNA_sequence |
GTTGGTTAGAGAGTCGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTAGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACTCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_plumosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111159",
"accession": "JN680951.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "JN680949.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
36.0
|
id |
3095e6a9-e02a-4d3e-93c8-40467235a797
|
scientificName |
Callopora lineata
|
AphiaID |
111197
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-57
|
target_gene |
18S
|
DNA_sequence |
GTTGGTTAGAGAGTCGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTAGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACTCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_plumosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111159",
"accession": "JN680951.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "JN680949.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
35.0
|
id |
468d9bb2-60d7-4ee9-987e-1d8de0010f51
|
scientificName |
Callopora lineata
|
AphiaID |
111197
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-54
|
target_gene |
18S
|
DNA_sequence |
GTTGGTTAGAGAGTCGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTAGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACTCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_plumosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111159",
"accession": "JN680951.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "JN680949.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
9.0
|
id |
17f2d200-b288-49d6-b6ac-74ca65f9a410
|
scientificName |
Callopora lineata
|
AphiaID |
111197
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-59
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGGAGGGCGGACGGCCGCACTGGTCGCTCTCGCCCGACCGAGCCAGGCGCAGAGGGCGCGCGTCGCTTGCACTTCACCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "JN680949.1.1836_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "FJ152026.1.1903_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bryozoa_XXX_sp.",
"accession": "FJ153752.1.1820_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bryozoa_XXX_sp.",
"accession": "FJ486006.1.831_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
5.0
|
id |
e9751b79-674d-4637-b587-d9326300bed2
|
scientificName |
Callopora lineata
|
AphiaID |
111197
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-50
|
target_gene |
18S
|
DNA_sequence |
GTTGGTTAGAGAGTCGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTAGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACTCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_plumosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111159",
"accession": "JN680951.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "JN680949.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
4.0
|
id |
8c418b8f-4c1f-4f65-ab67-e96890fa7771
|
scientificName |
Callopora lineata
|
AphiaID |
111197
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-36
|
target_gene |
18S
|
DNA_sequence |
GTTGGTTAGAGAGTCGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTAGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACTCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_plumosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111159",
"accession": "JN680951.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "JN680949.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
3.0
|
id |
3ac059e5-cfed-4e8f-bb34-076ea85bfa8f
|
scientificName |
Callopora lineata
|
AphiaID |
111197
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-55
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGGAGGGCGGACGGCCGCACTGGTCGCTCTCGCCCGACCGAGCCAGGCGCAGAGGGCGCGCGTCGCTTGCACTTCACCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "JN680949.1.1836_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "FJ152026.1.1903_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bryozoa_XXX_sp.",
"accession": "FJ153752.1.1820_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bryozoa_XXX_sp.",
"accession": "FJ486006.1.831_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
2.0
|
id |
8190213f-b6bf-492c-9a96-97c0f4c117ba
|
scientificName |
Callopora lineata
|
AphiaID |
111197
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-38
|
target_gene |
18S
|
DNA_sequence |
GTTGGTTAGAGAGTCGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTAGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACTCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_plumosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111159",
"accession": "JN680951.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "JN680949.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2.0
|
id |
7a456ed3-f6c1-49e9-a03e-4a6ee185ebc1
|
scientificName |
Callopora lineata
|
AphiaID |
111197
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-49
|
target_gene |
18S
|
DNA_sequence |
GTTGGTTAGAGAGTCGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTAGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACTCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_plumosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111159",
"accession": "JN680951.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Callopora_lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"accession": "JN680949.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
ac006870-ca27-4b3f-8239-5bf420f4586b
|
scientificName |
Callopora lineata
|
AphiaID |
111197
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-57
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGGAGGGCGGACGGCCGCACTGGTCGCTCTCGCCCGACCGAGCCAGGCGCAGAGGGCGCGCGTCGCTTGCACTTTGCCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Callopora lineata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111197",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "FJ196129.1.1578_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "JN680940.1.1832_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_fulva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111153",
"accession": "FJ152023.1.2123_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Callopora_dumerilii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111196",
"accession": "FJ152025.1.2143_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
6.0
|
|