PacMAN decision support system

Potential detection of Apionsoma (Apionsoma) misakianum in Fiji

Description:

Potential detection of Apionsoma (Apionsoma) misakianum with confidence low on 2022-06-20 in material sample S41, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Apionsoma (Apionsoma) misakianum
Annelida > Sipuncula > Phascolosomatidae
WoRMS: 266492

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

Reads:

2.0

Names:

Occurrences:

view occurrences

id	84a86b84-611c-4948-b39b-df2ca3e0c306
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S41
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGCTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGCGCCGGCGGGTGGTTCGCCTCGCGGCGTTTACTGCCTGCTCGGTCCTACCTATCCTGTTCACTGCGGTTGTGCTCTTGACTGAGTGCCCGCGGCGACTGGACCGTTTACTTTGAAAAAATTAGAGTGCTTAAGGCA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	b58ec216-e445-4208-b5fe-f699e0c0c74f
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S41
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	045c1335-fc1d-4e45-81a0-0b1f255e3918
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S40
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGCTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGCGCCGGCGGGTGGTTCGCCTCGCGGCGTTTACTGCCTGCTCGGTCCTACCTATCCTGTTCACTGCGGTTGTGCTCTTGACTGAGTGCCCGCGGCGACTGGACCGTTTACTTTGAAAAAATTAGAGTGCTTAAGGCA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	38403ab3-ee5a-4b75-b9fd-db97f26a5cfb
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S40
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	6a350ee4-3b33-456e-9665-3226ed0e11b5
scientificName	Apionsoma (Apionsoma) misakianum
AphiaID	266492
eventDate	2022-06-20
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S59
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCCCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCATCGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Apionsoma misakianum", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "AY210440.1.1815_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Apionsoma_misakianum", "accession": "DQ299952.1.1769_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Apionsoma (Apionsoma) misakianum has pest status in Fiji.

No notes found.