Occurrences: |
view occurrences
id |
554b4387-4311-4cc7-ba25-2bce06a9f694
|
scientificName |
Chaetoceros
|
eventDate |
2022-02-01
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S18
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
128.0
|
id |
15fdeb80-715d-40f3-ab79-fad711b3f6c2
|
scientificName |
Chaetoceros
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S20
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
119.0
|
id |
e42e5103-1d8b-4b50-af19-7b16d898fd83
|
scientificName |
Chaetoceros
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S19
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
116.0
|
id |
49150ac6-784a-46d9-b338-851e143493c0
|
scientificName |
Chaetoceros
|
eventDate |
2022-02-01
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S17
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
78.0
|
id |
fbe902d6-3dfd-48ce-8746-4797a6a1d820
|
scientificName |
Chaetoceros
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S16
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
69.0
|
id |
a2126cba-26b2-4bf7-b5de-6d914a958315
|
scientificName |
Chaetoceros
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S42
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
37.0
|
id |
7bbd05b6-0a2d-434c-8ac5-c222eeba1579
|
scientificName |
Chaetoceros
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S15
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
14.0
|
id |
e29c4b7c-63a0-479a-a30b-d93f3aca550a
|
scientificName |
Chaetoceros
|
eventDate |
2022-02-01
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S14
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
8.0
|
id |
a73901cf-d80f-4e02-ada8-ffbff7f03624
|
scientificName |
Chaetoceros
|
eventDate |
2022-02-01
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S13
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2.0
|
id |
6263e053-3ef2-49c9-9046-3a48e1009549
|
scientificName |
Chaetoceros
|
eventDate |
2022-02-01
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S1
|
target_gene |
18S
|
DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
5b3e946a-46d4-4e89-a372-d03869a9767d
|
scientificName |
Chaetoceros decipiens
|
AphiaID |
149126
|
eventDate |
2022-02-01
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S42
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
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