PacMAN decision support system

Potential detection of Leptocylindrus danicus in Fiji

Description:

Potential detection of Leptocylindrus danicus with confidence low on 2023-04-27 in material sample USP-24-01-13, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Leptocylindrus danicus
Heterokontophyta > Bacillariophyceae > Leptocylindrales > Leptocylindraceae
WoRMS: 149106

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

4.0

Names:

Occurrences:

view occurrences

id	04d5974a-61b4-43ce-96b8-12a45f088041
scientificName	Leptocylindrus
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-13
target_gene	18S
DNA_sequence	TGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149038", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305280.1.910_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305373.1.930_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	4.0

id	651c6583-f231-49dd-8310-51d04fe765eb
scientificName	Leptocylindrus
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-13
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGGTTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGCCTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus sp.", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394112.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394099.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 0.985, "query_cover": 0.9952 } ] }
organismQuantity	3.0

id	0f1e28b3-9747-4761-845a-baf207a97735
scientificName	Leptocylindrus
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-12
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGGTTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGCCTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus sp.", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394112.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "HQ394099.1.841_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 0.985, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	61088292-e768-4663-ba07-081686999a47
scientificName	Leptocylindrus
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-12
target_gene	18S
DNA_sequence	TGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Leptocylindrus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149038", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305280.1.910_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "JF305373.1.930_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus danicus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149106", "accession": "AJ535175.1.1805_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus sp.", "accession": "GU823199.1.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Leptocylindrus aporus", "accession": "KC814810.1.1751_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Leptocylindrus danicus does not have an offial status in Fiji.

No notes found.