PacMAN decision support system

Potential detection of Lumbrineris perkinsi in Fiji

Description:

Potential detection of Lumbrineris perkinsi with confidence medium on 2023-04-27 in material sample USP-24-01-107, marker COI

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Lumbrineris perkinsi
Annelida > Polychaeta > Eunicida > Lumbrineridae
WoRMS: 327192

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

280.0

Names:

Occurrences:

view occurrences

id	e8675c09-5fa4-477f-ab73-0009c2da48da
scientificName	Lumbrineris perkinsi
AphiaID	327192
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20230427_S3C
materialSampleID	USP-24-01-107
target_gene	COI
DNA_sequence	ACTAGCAAGAAATATAGCACATGCTGGCCCATCAGTAGATCTTGCAATCTTCTCTTTACACCTTGCCGGAACATCGTCTATCCTTGGATCAATCAACTTTATTACTACTATCTTCAACATACGAACATCAGGCTTCCGATTAGAACGAGTTCCTCTATTTGTTTGATCCTTAAAAGTAACTACAATTCTACTCCTTTTATCACTACCAGTACTAGCAGGAGCCATCACCATACTTCTAACAGACCGTAACCTAAACACATCCTTTTTCGATCCAGCAGGAGGTGGTGACCCTGTACTATTTCAGCATCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Lumbrineris perkinsi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327192", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Lumbrineris perkinsi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327192", "accession": "KP254185", "identity": 1, "query_cover": 0.9968 } ] }
organismQuantity	280.0

id	ab3491cf-62cc-4b52-9a9c-89c90689f23d
scientificName	Lumbrineris perkinsi
AphiaID	327192
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20230427_S1A
materialSampleID	USP-24-01-103
target_gene	COI
DNA_sequence	ACTAGCAAGAAATATAGCACATGCTGGCCCATCAGTAGATCTTGCAATCTTCTCTTTACACCTTGCCGGAACATCGTCTATCCTTGGATCAATCAACTTTATTACTACTATCTTCAACATACGAACATCAGGCTTCCGATTAGAACGAGTTCCTCTATTTGTTTGATCCTTAAAAGTAACTACAATTCTACTCCTTTTATCACTACCAGTACTAGCAGGAGCCATCACCATACTTCTAACAGACCGTAACCTAAACACATCCTTTTTCGATCCAGCAGGAGGTGGTGACCCTGTACTATTTCAGCATCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Lumbrineris perkinsi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327192", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Lumbrineris perkinsi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327192", "accession": "KP254185", "identity": 1, "query_cover": 0.9968 } ] }
organismQuantity	74.0

id	82a159d9-44aa-47d2-864d-df285157f277
scientificName	Lumbrineris perkinsi
AphiaID	327192
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20230427_S3C
materialSampleID	USP-24-01-107
target_gene	COI
DNA_sequence	ACTAGCAAGAAATATAGCACATGCTGGCCCATCAGTAGATCTTGCAATCTTCTCTTTACACCTTGCCGGAACATCGTCTATCCTTGGATCAATCAACTTTATTACTACTATCTTCAACATACGAACATCAGGCTTCCGATTAGAACGAGTTCCTCTATTTGTTTGATCCTTAAAAGTAACTACAATTCTACTCCTTTTATCACTACCAGTACTAGCAGGAGCCATCACCATACTTCTAACAGACCGTAACCTAAACACATCCTTTTTCGATCCAGCAGGAGGCGGTGACCCTGTACTATTTCAGCATCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Lumbrineris perkinsi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327192", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Lumbrineris perkinsi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327192", "accession": "KP254185", "identity": 0.997, "query_cover": 0.9968 } ] }
organismQuantity	2.0

id	04e1e469-c097-4f85-9b41-75a3777416f3
scientificName	Lumbrineris perkinsi
AphiaID	327192
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20230427_S1A
materialSampleID	USP-24-01-103
target_gene	COI
DNA_sequence	ACTAGCAAGAAATATAGCACATGCTGGCCCATCAGTAGATCTTGCAATCTTCTCTTTACACCTTGCCGGAACATCGTCTATCCTTGGATCAATCAACTTTATTACTACTATCTTCAACATACGAACATCAGGCTTCCGATTAGAACGAGTTCCTCTATTTGTTTGATCCTTAAAAGTAACTACAATTCTACTCCTTTTATCACTACCAGTACTAGCAGGAGCCATCACCATACTTCTAACAGACCGTAACCTAAACACATCCTTTTTCGATCCAGCAGGAGGCGGTGACCCTGTACTATTTCAGCATCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Lumbrineris perkinsi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327192", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Lumbrineris perkinsi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327192", "accession": "KP254185", "identity": 0.997, "query_cover": 0.9968 } ] }
organismQuantity	1.0

id	37e3a8df-de7a-4bfc-ae6b-463e62655cf6
scientificName	Lumbrineris perkinsi
AphiaID	327192
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20230427_S3C
materialSampleID	USP-24-01-107
target_gene	COI
DNA_sequence	ACTAGCAAGAAATATAGCACATGCTGGCCCATCAGTAGATCTTGCAATCTTCTCTTTACACCTTGCCGGAACATCATCTATCCTTGGATCAATCAACTTTATTACTACTATCTTCAACATACGAACATCAGGCTTCCGATTAGAACGAGTTCCTCTATTTGTTTGATCCTTAAAAGTAACTACAATTCTACTCCTTTTATCACTACCAGTACTAGCAGGAGCCATCACCATACTTCTAACAGACCGTAACCTAAACACATCCTTTTTCGATCCAGCAGGAGGTGGTGACCCTGTACTATTTCAGCATCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Lumbrineris perkinsi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327192", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Lumbrineris perkinsi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327192", "accession": "KP254185", "identity": 0.997, "query_cover": 0.9968 } ] }
organismQuantity	1.0

Lumbrineris perkinsi does not have an offial status in Fiji.

No notes found.