| Occurrences: |
view occurrences
| id |
04e2bc0b-6a31-4c2c-94d2-63022a9386f1
|
| scientificName |
Tubastraea coccinea
|
| AphiaID |
291251
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S68
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGCCCGGCCGGTCTGCCGCAAGGTATGTTACTGGCCGAGCTGTTCTTCCTCGCAAAGACTGTGTGTGCTCTTAACTGAGTGTGCTCAGGATCTGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Tubastraea coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "JQ688008.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "AJ133556.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lobactis_scutaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:716542",
"accession": "AF052884.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "Z92906.1.1797_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizopsammia_minuta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:210738",
"accession": "Z92907.1.1799_U",
"identity": 0.991,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
9.0
|
| id |
823fbbcc-ecfd-4bfb-b77c-7117cafe520e
|
| scientificName |
Tubastraea coccinea
|
| AphiaID |
291251
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S40
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGCCCGGCCGGTCTGCCGCAAGGTATGTTACTGGCCGAGCTGTTCTTCCTCGCAAAGACTGTGTGTGCTCTTAACTGAGTGTGCTCAGGATCTGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Tubastraea coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "JQ688008.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "AJ133556.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lobactis_scutaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:716542",
"accession": "AF052884.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "Z92906.1.1797_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizopsammia_minuta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:210738",
"accession": "Z92907.1.1799_U",
"identity": 0.991,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
6.0
|
| id |
c24e08eb-78f4-4842-8084-b786fd787e44
|
| scientificName |
Tubastraea coccinea
|
| AphiaID |
291251
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S41
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGCCCGGCCGGTCTGCCGCAAGGTATGTTACTGGCCGAGCTGTTCTTCCTCGCAAAGACTGTGTGTGCTCTTAACTGAGTGTGCTCAGGATCTGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Tubastraea coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "JQ688008.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "AJ133556.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lobactis_scutaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:716542",
"accession": "AF052884.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "Z92906.1.1797_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizopsammia_minuta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:210738",
"accession": "Z92907.1.1799_U",
"identity": 0.991,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
f6f7d567-2bf7-424a-9976-850704043519
|
| scientificName |
Tubastraea coccinea
|
| AphiaID |
291251
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S35
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGGATGGCCCGGCCGGTCTGCCGCAAGGTATGTTACTGGCCGAGCTGTTCTTCCTCGCAAAGACTGTGTGTGCTCTTAACTGAGTGTGCTCAGGATCTGCGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Tubastraea coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "JQ688008.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "AJ133556.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Lobactis_scutaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:716542",
"accession": "AF052884.1.1797_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubastraea_coccinea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:291251",
"accession": "Z92906.1.1797_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Rhizopsammia_minuta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:210738",
"accession": "Z92907.1.1799_U",
"identity": 0.991,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
|