| Occurrences: |
view occurrences
| id |
97c951f5-430c-4075-b145-7b891ebc0007
|
| scientificName |
Perna viridis
|
| AphiaID |
367822
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-56
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCAGGCTTGCGGTCCGACGCACGTCGGTTTACTGCTTGTCCTGACCTACCTCCCGGTTCGCCCTTGGTGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Perna viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:367822",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Choromytilus chorus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:506001",
"accession": "DQ640541.1.877_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perna viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:367822",
"accession": "DQ640527.1.873_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Choromytilus chorus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:506001",
"accession": "DQ640540.1.877_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perna viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:367822",
"accession": "EF613234.1.1737_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Choromytilus chorus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:506001",
"accession": "DQ640539.1.877_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
33.0
|
| id |
052a456a-4df9-43bd-b6e9-810653053d4a
|
| scientificName |
Perna viridis
|
| AphiaID |
367822
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-37
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCAGGCTTGCGGTCCGACGCACGTCGGTTTACTGCTTGTCCTGACCTACCTCCCGGTTCGCCCTTGGTGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Perna viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:367822",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Choromytilus chorus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:506001",
"accession": "DQ640541.1.877_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perna viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:367822",
"accession": "DQ640527.1.873_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Choromytilus chorus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:506001",
"accession": "DQ640540.1.877_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perna viridis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:367822",
"accession": "EF613234.1.1737_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Choromytilus chorus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:506001",
"accession": "DQ640539.1.877_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|