| Occurrences: |
view occurrences
| id |
0574590d-7894-4015-b006-7b4293ee8782
|
| scientificName |
Chaetoceros
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-13
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
24.0
|
| id |
94afe928-9c4f-4e1f-9e51-3ffd2ffb40b2
|
| scientificName |
Chaetoceros
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-12
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
6.0
|
| id |
29d1185a-11b1-4592-a3df-bb7d15bf37a7
|
| scientificName |
Chaetoceros
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-15
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGCACCGTGGTAATGATGAATAGGGACAGTTGTGGGTATTCGTATTCACTTGTAAGAGGTGAAATTCTTAGATTAAGGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTGTGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148985",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros mitra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148986",
"accession": "KX611427.1.1596_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611428.1.1564_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611429.1.1461_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros laevisporus",
"accession": "KX611430.1.1512_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
b5968c08-a0b5-4988-8851-5fe868bc465e
|
| scientificName |
Chaetoceros decipiens
|
| AphiaID |
149126
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-01
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTTAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTGGGAGAATGCAGTCCAACCTTAGGGTTGGTACTCGCACTCTCCGGCCATCCTTGGGTGGAGCCTGTCTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros decipiens",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149126",
"accession": "DQ455710.1.1310_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|