PacMAN decision support system

Potential detection of Salmo salar in Fiji

Description:

Potential detection of Salmo salar with confidence low on 2022-05-25 in material sample S135, marker COI

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Salmo salar
Chordata > Teleostei > Salmoniformes > Salmonidae
WoRMS: 127186 GISD: 376 CABI: 65307

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

17.0

Names:

Occurrences:

view occurrences

id	ac398180-c1bc-4f81-b9ad-e26d3f65a379
scientificName	Thunnus obesus
AphiaID	127028
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S135
target_gene	COI
DNA_sequence	CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTAACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "confidence": 0.86 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826614", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826616", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus albacares", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127027", "accession": "KM055417", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ107629", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ107642", "identity": 1, "query_cover": 0.9968 } ] }
organismQuantity	17.0

id	86793434-3c7b-467f-8a47-56be0e21202a
scientificName	Thunnus obesus
AphiaID	127028
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S136
target_gene	COI
DNA_sequence	CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTAACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "confidence": 0.86 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826614", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826616", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus albacares", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127027", "accession": "KM055417", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ107629", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ107642", "identity": 1, "query_cover": 0.9968 } ] }
organismQuantity	15.0

id	059b492a-c714-4fed-ae96-5943611eb699
scientificName	Thunnus obesus
AphiaID	127028
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S153
target_gene	COI
DNA_sequence	CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTAACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "confidence": 0.86 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826614", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826616", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus albacares", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127027", "accession": "KM055417", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ107629", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ107642", "identity": 1, "query_cover": 0.9968 } ] }
organismQuantity	5.0

id	38387409-850f-4320-8882-af88eac8df3a
scientificName	Thunnus obesus
AphiaID	127028
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S136
target_gene	COI
DNA_sequence	CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTGACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": null }, "annotations": [ { "method": "RDP classifier", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "DQ835869", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus obesus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127028", "accession": "OL014470", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Thunnus atlanticus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:159343", "accession": "OK030802", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826614", "identity": 0.997, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Salmo salar", "scientificNameID": "urn:lsid:marinespecies.org:taxname:127186", "accession": "MW826616", "identity": 0.997, "query_cover": 0.9968 } ] }
organismQuantity	2.0

Salmo salar in Fiji

Status

Salmo salar does not have an offial status in Fiji.

Notes

Add a note

No notes found.