| Occurrences: |
view occurrences
| id |
05b23e61-6bac-4bd6-ac09-369e2dad7ae8
|
| scientificName |
Chaetoceros rostratus
|
| AphiaID |
178201
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-67
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"accession": "X85391.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "HQ869026.1.871_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "AJ535167.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "AY426893.1.820_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "HQ912650.1.1640_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
5.0
|
| id |
7b99dd13-06de-4575-a813-173d0c4a74f8
|
| scientificName |
Chaetoceros rostratus
|
| AphiaID |
178201
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-69
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"accession": "X85391.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "HQ869026.1.871_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "AJ535167.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "AY426893.1.820_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "HQ912650.1.1640_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
5.0
|
| id |
e2f504ca-ed51-455a-ae41-37fd8cf57b33
|
| scientificName |
Chaetoceros rostratus
|
| AphiaID |
178201
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-73
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"accession": "X85391.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "HQ869026.1.871_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "AJ535167.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "AY426893.1.820_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "HQ912650.1.1640_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
fc54feff-de3d-4470-8b24-4522e3e488b7
|
| scientificName |
Chaetoceros rostratus
|
| AphiaID |
178201
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-68
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"accession": "X85391.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "HQ869026.1.871_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "AJ535167.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "AY426893.1.820_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "HQ912650.1.1640_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|