| Occurrences: |
view occurrences
| id |
a0b3db05-f4d2-4720-b98c-e910d76fc926
|
| scientificName |
Syllis bella
|
| AphiaID |
241241
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S81
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGAACTGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGAATTTAGCTGTCAGAGGTGAAATTCTTAGATTTGCTAAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Typosyllis bella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:332284",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_bella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:332284",
"accession": "JF913971.1.1725_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sarcocystis10 gallotiae",
"accession": "AY015112.1.1591_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
19.0
|
| id |
0611ec23-945b-40c0-8bbf-94d70dff1a18
|
| scientificName |
Syllis bella
|
| AphiaID |
241241
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S80
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGAACTGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGAATTTAGCTGTCAGAGGTGAAATTCTTAGATTTGCTAAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Typosyllis bella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:332284",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_bella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:332284",
"accession": "JF913971.1.1725_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sarcocystis10 gallotiae",
"accession": "AY015112.1.1591_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
d24aa7de-06cf-4066-b6cb-6b7666bf6466
|
| scientificName |
Syllis bella
|
| AphiaID |
241241
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S87
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGAACTGAAGTAATGATTAATAGGGACAGTTGGGGGCATTCGAATTTAGCTGTCAGAGGTGAAATTCTTAGATTTGCTAAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Typosyllis bella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:332284",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_bella",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:332284",
"accession": "JF913971.1.1725_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sarcocystis10 gallotiae",
"accession": "AY015112.1.1591_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|