| Occurrences: |
view occurrences
| id |
0675b072-5eb3-4009-96d2-9d7fbbab3fa8
|
| scientificName |
Tubificoides
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-69
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTCGCGGTTCGCCTCGCGGCGATCACTGCCCGTCCTGACCTACCTCCCGGTTTTCCCTTGGTGCTCTTCGTTGAGTGCTTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Tubificoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:137393",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Dero_vaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1041948",
"accession": "DQ459966.1.1731_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubificoides_amplivasatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:137570",
"accession": "HM460001.1.1741_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubificoides_benedii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:137571",
"accession": "HM459994.1.1742_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubificoides_amplivasatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:137570",
"accession": "HM460003.1.1713_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pristina_longiseta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:993072",
"accession": "GU901933.1.1742_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
70233141-ba8c-4a54-b489-68cbd3b380ff
|
| scientificName |
Tubificoides
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-68
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTCGCGGTTCGCCTCGCGGCGATCACTGCCCGTCCTGACCTACCTCCCGGTTTTCCCTTGGTGCTCTTCGTTGAGTGCTTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Tubificoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:137393",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Dero_vaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1041948",
"accession": "DQ459966.1.1731_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubificoides_amplivasatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:137570",
"accession": "HM460001.1.1741_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubificoides_benedii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:137571",
"accession": "HM459994.1.1742_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Tubificoides_amplivasatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:137570",
"accession": "HM460003.1.1713_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pristina_longiseta",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:993072",
"accession": "GU901933.1.1742_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|