| Occurrences: |
view occurrences
| id |
06a561a8-9c44-4e97-8aa5-7b7d6a81e356
|
| scientificName |
Loimia medusa
|
| AphiaID |
131499
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S22
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Loimia medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Loimia_medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"accession": "AY040690.1.1756_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lanice_conchilega",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131495",
"accession": "JN936470.1.1658_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
298.0
|
| id |
95c5167b-6b74-4e51-8c5d-274863665e06
|
| scientificName |
Loimia medusa
|
| AphiaID |
131499
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S21
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Loimia medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Loimia_medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"accession": "AY040690.1.1756_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lanice_conchilega",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131495",
"accession": "JN936470.1.1658_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
9.0
|
| id |
bc735515-87ce-4898-bfa0-cad81016ca60
|
| scientificName |
Loimia medusa
|
| AphiaID |
131499
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S43
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Loimia medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Loimia_medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"accession": "AY040690.1.1756_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lanice_conchilega",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131495",
"accession": "JN936470.1.1658_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|