PacMAN decision support system

Potential detection of Ciona savignyi in Fiji

Description:

Potential detection of Ciona savignyi with confidence medium on 2022-02-01 in material sample S16, marker 18S

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ciona savignyi
Chordata > Ascidiacea > Phlebobranchia > Cionidae
WoRMS: 250292

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

34.0

Names:

1

Occurrences:

view occurrences

id	2ed42b38-25d0-4512-ae6c-a90ae11b8975
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S16
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	34.0

id	ec11e779-3599-49ad-9a51-f18770be87bc
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S13
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	10.0

id	7cc80da8-08cf-431e-9a12-19f3b654b5d0
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S42
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	5.0

id	06ac0a2c-5bb2-4baf-b75f-424392744345
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S5
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	17680b4e-21a4-478b-a7d4-8fa5d28d2a17
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S20
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	1a910a5f-2d5c-4790-96b9-07a48063a6ac
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S18
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	3c227ca1-4409-4643-b11e-4a453c951e9e
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S7
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	ba8c5b6a-0d82-4c47-9d7d-1791c4cc69a5
scientificName	Ciona savignyi
AphiaID	250292
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S15
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ciona savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01030526.2.1210_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01059881.1228.2676_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ecteinascidia_herdmanni", "accession": "FM244847.1.1607_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01041541.1.1348_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ciona_savignyi", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250292", "accession": "AACT01045610.1.1202_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Ciona savignyi in Fiji

Status

Ciona savignyi does not have an offial status in Fiji.

Notes

No notes found.