Occurrences: |
view occurrences
id |
7f2196ec-d1af-46b2-ade6-cd72d936b521
|
scientificName |
Symplegma
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S87
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212501",
"accession": "DQ346655.1.1765_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "AB211066.1.1750_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
15741.0
|
id |
49da4db5-f9b8-41ff-9903-504b236d9422
|
scientificName |
Symplegma
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S78
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212501",
"accession": "DQ346655.1.1765_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "AB211066.1.1750_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
546.0
|
id |
4f645a98-4044-4e19-b7c8-05cc466c7415
|
scientificName |
Symplegma
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S80
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212501",
"accession": "DQ346655.1.1765_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "AB211066.1.1750_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
292.0
|
id |
e90806a0-a1f0-41ce-8b35-362f62f63a64
|
scientificName |
Symplegma
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S79
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212501",
"accession": "DQ346655.1.1765_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
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},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
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},
{
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"accession": "AB211066.1.1750_U",
"identity": 0.971,
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}
]
}
|
organismQuantity |
115.0
|
id |
e8c68820-4d2b-4846-bb47-e8e6d27cef32
|
scientificName |
Symplegma
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S74
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
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"accession": "AF165826.1.1066_U",
"identity": 1,
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},
{
"method": "VSEARCH",
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"accession": "DQ346655.1.1765_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "AB211066.1.1750_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
95.0
|
id |
d9cf0ec1-1d2e-4edf-91be-3323da12440e
|
scientificName |
Symplegma
|
eventDate |
2022-10-03
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S77
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
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"accession": "DQ346655.1.1765_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
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},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "AB211066.1.1750_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
75.0
|
id |
07ab3d45-5f46-4191-80da-cdb1389713ec
|
scientificName |
Symplegma
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S81
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212501",
"accession": "DQ346655.1.1765_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.976,
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},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "AB211066.1.1750_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
7.0
|
id |
8514b511-b178-483e-b751-8db7717cd3a6
|
scientificName |
Symplegma
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S85
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212501",
"accession": "DQ346655.1.1765_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "AB211066.1.1750_U",
"identity": 0.971,
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}
]
}
|
organismQuantity |
4.0
|
id |
cbaabd43-630c-42a5-8546-8f18f365c8a5
|
scientificName |
Symplegma
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S87
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCAGTGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212501",
"accession": "DQ346655.1.1765_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
233.0
|
id |
c095b4b7-6dbc-4679-b65e-bb3adf4fe868
|
scientificName |
Symplegma
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S87
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAATTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGCGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212501",
"accession": "DQ346655.1.1765_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
2.0
|
id |
8de10dda-76ac-4eef-9ab5-7ef95755fd39
|
scientificName |
Symplegma
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S74
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCAGTGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212501",
"accession": "DQ346655.1.1765_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
id |
ca258b9a-20bb-480f-89b5-1fb1a952e598
|
scientificName |
Symplegma
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S78
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCAGTGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Symplegma",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:206885",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_reptans",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251438",
"accession": "AF165826.1.1066_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Symplegma_viride",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212501",
"accession": "DQ346655.1.1765_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
|