Occurrences: |
view occurrences
id |
afc25bec-effb-47ee-af6f-fe12b2220ffa
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-59
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
367.0
|
id |
2a154542-e136-40a5-855a-7a6447cfada2
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-58
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
251.0
|
id |
32f0be70-4e75-4552-ba23-23ec2a3d04f7
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-55
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
38.0
|
id |
4e79c97f-d47d-4757-ac54-9da50bbcfff0
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-57
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
34.0
|
id |
1d0cef3d-ca96-4a73-98a5-2af9afbaceb6
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-54
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
30.0
|
id |
ba1a9f10-7747-4a11-baee-512675784346
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-58
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAAAAGTGTATATTTAGTCTGGTGCCAGCAGCCGCGGAAACTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGA
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.84
}
]
}
|
organismQuantity |
30.0
|
id |
5037c100-2a0b-4daf-9717-37d04a3ed673
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-37
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
18.0
|
id |
8f870448-a2c9-415d-86d5-a0b7e136d9db
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-58
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
18.0
|
id |
cbc8492b-0b76-40be-901c-8088aa6ba14f
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-59
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTACTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
18.0
|
id |
93325a7c-8f56-4973-ad2c-23f5f16f869b
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-49
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
15.0
|
id |
081baec3-d2e4-46f8-a4d4-fcdf1f443832
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-38
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
13.0
|
id |
e81ac95e-1ec7-4ab3-8878-73decb9e6c33
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-59
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
6.0
|
id |
503df2e9-e5ed-43bb-8a95-10a582690ff3
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-49
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTACTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
4.0
|
id |
c6a02727-f4d3-4274-a3a4-c790344e6ffc
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-57
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
4.0
|
id |
cfe8f420-9f64-4c0c-aaf1-225d2fb13d56
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-36
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
3.0
|
id |
1bb2ffe3-7c76-4173-a34a-0568ddd33f2a
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-59
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGTTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.87
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chelyosoma_siboja",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250015",
"accession": "AF165821.1.1781_U",
"identity": 0.971,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chelyosoma_siboja",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250015",
"accession": "AB104872.1.1781_U",
"identity": 0.971,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ascidiella_sp.",
"accession": "FM244843.1.1766_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
id |
5762a55e-cb0f-4a7e-9702-4afc11f8a982
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-37
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
id |
711977b7-7510-464d-b8f1-3d5b4bb625fb
|
scientificName |
Ascidia sydneiensis var. samea
|
AphiaID |
215940
|
eventDate |
2023-08-15
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
USP-24-01-54
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGTCGGTCCGTCGCAAGGCGTGCACTGACCGTCCTGGCCTCACCCCCGGTTCTCCGCCGGTGCCCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ascidia sydneiensis samea",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
|