| Occurrences: |
view occurrences
| id |
c6fb28b8-652b-43fa-bbe0-e97e12038999
|
| scientificName |
Mercenaria mercenaria
|
| AphiaID |
141919
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S59
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Paphia textile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:214508",
"accession": "JN996721.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807342.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "AM774568.1.1781_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Dosinia japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507589",
"accession": "JN996713.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"accession": "AF106073.1.1804_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
137.0
|
| id |
08a5ba88-91e2-4561-8ad5-e3916ab71631
|
| scientificName |
Mercenaria mercenaria
|
| AphiaID |
141919
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S40
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Paphia textile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:214508",
"accession": "JN996721.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807342.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "AM774568.1.1781_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Dosinia japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507589",
"accession": "JN996713.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"accession": "AF106073.1.1804_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
15.0
|
| id |
1b22e911-7ced-4e2f-961a-bfe20554a16b
|
| scientificName |
Mercenaria mercenaria
|
| AphiaID |
141919
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S50
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Paphia textile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:214508",
"accession": "JN996721.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807342.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "AM774568.1.1781_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Dosinia japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507589",
"accession": "JN996713.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"accession": "AF106073.1.1804_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
8.0
|
|