PacMAN decision support system

Potential detection of Ruditapes philippinarum in Fiji

Description:

Potential detection of Ruditapes philippinarum with confidence low on 2022-06-20 in material sample S59, marker 18S

Confidence:

low

Risk:

high priority view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ruditapes philippinarum
Mollusca > Bivalvia > Venerida > Veneridae
WoRMS: 231750 CABI: 61697

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

137.0

Names:

Priority lists:

Top 25 Marine non-indigenous species for the Pacific region

Occurrences:

view occurrences

id	c6fb28b8-652b-43fa-bbe0-e97e12038999
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-06-20
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S59
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	137.0

id	08a5ba88-91e2-4561-8ad5-e3916ab71631
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S40
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	15.0

id	7c5180a6-3301-473f-aeb8-64f5280507d4
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-06-20
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S40
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	15.0

id	1b22e911-7ced-4e2f-961a-bfe20554a16b
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-06-20
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S50
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	8.0

id	a671a9ed-34f0-4640-90b8-db4e0f50c256
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-06-20
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S56
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	4.0

id	666a6e34-0dd6-45cd-a6ee-e8f689496e8d
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-06-20
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S50
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	3.0

id	8a33c2ef-98cd-43a0-aec6-55e0090d29a4
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-06-20
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S59
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	2.0

Ruditapes philippinarum in Fiji

Status

Ruditapes philippinarum does not have an offial status in Fiji.

Notes

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No notes found.