| Occurrences: |
view occurrences
| id |
08e7fc5d-5be1-4cb5-8880-d4efcceba752
|
| scientificName |
Mercenaria mercenaria
|
| AphiaID |
141919
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-34
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Paphia textile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:214508",
"accession": "JN996721.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807342.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "AM774568.1.1781_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Dosinia japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507589",
"accession": "JN996713.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"accession": "AF106073.1.1804_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
| id |
1d29d36d-37cf-4368-a95e-a70df9acc1bf
|
| scientificName |
Mercenaria mercenaria
|
| AphiaID |
141919
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-31
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Paphia textile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:214508",
"accession": "JN996721.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807342.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "AM774568.1.1781_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Dosinia japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507589",
"accession": "JN996713.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"accession": "AF106073.1.1804_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
d23be9fd-fb65-45da-ace0-b38033e23f41
|
| scientificName |
Mercenaria mercenaria
|
| AphiaID |
141919
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-30
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Paphia textile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:214508",
"accession": "JN996721.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807342.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "AM774568.1.1781_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Dosinia japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507589",
"accession": "JN996713.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"accession": "AF106073.1.1804_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
eb19d456-e1d4-4973-b082-44d53287cddd
|
| scientificName |
Mercenaria mercenaria
|
| AphiaID |
141919
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-33
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Paphia textile",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:214508",
"accession": "JN996721.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "JN807342.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ruditapes philippinarum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:231750",
"accession": "AM774568.1.1781_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Dosinia japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507589",
"accession": "JN996713.1.1831_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mercenaria mercenaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141919",
"accession": "AF106073.1.1804_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
|