Occurrences: |
view occurrences
id |
e5582ace-332b-4a58-8b72-95e14bad11bc
|
scientificName |
Microcosmus
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S87
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103522",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
34.0
|
id |
c081ff67-13a6-4f1d-bc69-7ce4ef66d3e3
|
scientificName |
Microcosmus
|
eventDate |
2022-10-03
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S77
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103522",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
13.0
|
id |
08eb8c70-2341-4456-86aa-90c0fe487f1c
|
scientificName |
Microcosmus
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S74
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103522",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
9.0
|
id |
c7621a95-8bb4-4147-9688-4e009553de98
|
scientificName |
Microcosmus
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S81
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103522",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
id |
d0f2111e-6506-493b-a1d0-42e8c52726ae
|
scientificName |
Microcosmus exasperatus
|
AphiaID |
103838
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S74
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
61.0
|
id |
9b267009-3958-46cc-8935-ebb3dfc8da43
|
scientificName |
Microcosmus exasperatus
|
AphiaID |
103838
|
eventDate |
2022-10-03
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S77
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
57.0
|
id |
5c05e74f-4718-473e-aa41-91c442e75141
|
scientificName |
Microcosmus exasperatus
|
AphiaID |
103838
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S78
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
8.0
|
id |
f4bab346-26ce-4939-9801-1a01f93b495e
|
scientificName |
Microcosmus exasperatus
|
AphiaID |
103838
|
eventDate |
2022-10-03
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
S75
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
3.0
|
id |
d42d0af5-03e6-49c8-87db-6dfc224f94f9
|
scientificName |
Microcosmus exasperatus
|
AphiaID |
103838
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S87
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
id |
f5db6991-a99e-44ab-b822-b5fb55f2e497
|
scientificName |
Microcosmus exasperatus
|
AphiaID |
103838
|
eventDate |
2022-10-03
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S81
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
|