PacMAN decision support system

Potential detection of Rhizosolenia imbricata in Fiji

Description:

Potential detection of Rhizosolenia imbricata with confidence low on 2022-02-01 in material sample S16, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Rhizosolenia imbricata
Heterokontophyta > Bacillariophyceae > Rhizosoleniales > Rhizosoleniaceae
WoRMS: 149116

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

4.0

Names:

Occurrences:

view occurrences

id	09075af1-c8d8-425e-b0f4-ec1b603aa845
scientificName	Rhizosolenia
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S16
target_gene	18S
DNA_sequence	TTTGTTGGTTTGTGCACCATGGTAATGATTAAAAGAAACAGTCAGGGGTATTAGTATTCCGTAGTCAGAGGTGAAATTCTTGGATTTGCGGAAGACTCACAACTGCGAAAGCATTTACCAGGGATGTTTTCATTAATCAAGAACGAAAGTTTAGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rhizosolenia", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149069", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AB430589.1.1773_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia pungens", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149117", "accession": "JQ315683.1.1260_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "JQ315685.1.1265_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia imbricata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149116", "accession": "AJ535178.1.1801_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AY485508.1.1721_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	4.0

id	2d2e1664-44ad-49e4-ac5c-7cfd588f4982
scientificName	Sundstroemia similoides
AphiaID	1590709
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S16
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTTAGAATAGTCGGTCTTGCACTCAGTGTAAGTACCAGACTCTTCTTCCCATCTTTAGGGAGAACTCATATGGCATTAATTTGTTGTGTGATGTATCCTTATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rhizosolenia similoides", "scientificNameID": "urn:lsid:marinespecies.org:taxname:160531", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AB430589.1.1773_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia pungens", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149117", "accession": "JQ315683.1.1260_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "JQ315685.1.1265_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia imbricata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149116", "accession": "AJ535178.1.1801_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AY485508.1.1721_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	4.0

id	0a6cfe8f-1219-409d-88e7-1b08666701c5
scientificName	Rhizosolenia
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S20
target_gene	18S
DNA_sequence	TTTGTTGGTTTGTGCACCATGGTAATGATTAAAAGAAACAGTCAGGGGTATTAGTATTCCGTAGTCAGAGGTGAAATTCTTGGATTTGCGGAAGACTCACAACTGCGAAAGCATTTACCAGGGATGTTTTCATTAATCAAGAACGAAAGTTTAGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rhizosolenia", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149069", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AB430589.1.1773_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia pungens", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149117", "accession": "JQ315683.1.1260_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "JQ315685.1.1265_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia imbricata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149116", "accession": "AJ535178.1.1801_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AY485508.1.1721_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	87335b85-d924-4a1d-ba2a-b812b7366225
scientificName	Sundstroemia similoides
AphiaID	1590709
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S20
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTTAGAATAGTCGGTCTTGCACTCAGTGTAAGTACCAGACTCTTCTTCCCATCTTTAGGGAGAACTCATATGGCATTAATTTGTTGTGTGATGTATCCTTATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rhizosolenia similoides", "scientificNameID": "urn:lsid:marinespecies.org:taxname:160531", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AB430589.1.1773_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia pungens", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149117", "accession": "JQ315683.1.1260_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "JQ315685.1.1265_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia imbricata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149116", "accession": "AJ535178.1.1801_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AY485508.1.1721_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	53ccf2b0-cc15-41ec-89d4-96f91a30ccf1
scientificName	Sundstroemia similoides
AphiaID	1590709
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S19
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTTAGAATAGTCGGTCTTGCACTCAGTGTAAGTACCAGACTCTTCTTCCCATCTTTAGGGAGAACTCATATGGCATTAATTTGTTGTGTGATGTATCCTTATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rhizosolenia similoides", "scientificNameID": "urn:lsid:marinespecies.org:taxname:160531", "confidence": 0.96 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AB430589.1.1773_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia pungens", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149117", "accession": "JQ315683.1.1260_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "JQ315685.1.1265_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia imbricata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149116", "accession": "AJ535178.1.1801_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AY485508.1.1721_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	9b0203c0-8972-45cf-838f-688c4d854b2e
scientificName	Rhizosolenia
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S19
target_gene	18S
DNA_sequence	TTTGTTGGTTTGTGCACCATGGTAATGATTAAAAGAAACAGTCAGGGGTATTAGTATTCCGTAGTCAGAGGTGAAATTCTTGGATTTGCGGAAGACTCACAACTGCGAAAGCATTTACCAGGGATGTTTTCATTAATCAAGAACGAAAGTTTAGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Rhizosolenia", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149069", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AB430589.1.1773_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia pungens", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149117", "accession": "JQ315683.1.1260_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "JQ315685.1.1265_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia imbricata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149116", "accession": "AJ535178.1.1801_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Rhizosolenia setigera", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149115", "accession": "AY485508.1.1721_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Rhizosolenia imbricata in Fiji

Status

Rhizosolenia imbricata does not have an offial status in Fiji.

Notes

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No notes found.