| Occurrences: |
view occurrences
| id |
3d9058eb-403b-43cd-bd1c-fc44e729d2d5
|
| scientificName |
Branchiosyllis exilis
|
| AphiaID |
131279
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S76
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTCTTCGGAACCCGAGATAATGATTGAGAGGGACAGACGGGGGCACTTGTACTGCGGCGTGAGAGGTGAAATTCTTGGACCGTCGCAAGACAAACCCAGGCGAAAGCATTTGCCCAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Branchiosyllis exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Branchiosyllis_exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"accession": "JF903583.1.1887_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
5.0
|
| id |
09137e5b-6596-4149-82ef-ddf6a72c6c86
|
| scientificName |
Branchiosyllis exilis
|
| AphiaID |
131279
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S76
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGACGCCTTCACGTGGTCTCGCGGGCACAGGCCAAGTCCACCCGCGGTGCACTGCTGAGGGCTCCCCTCTGGCGGGGGGGTGCGCCCCTGTGCGTTGCCCTGCGAGAGCAGTCGCCGGTGCCCTTGACTGGGCCGCCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Branchiosyllis exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Branchiosyllis_exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"accession": "JF903584.1.1886_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
aebef6d0-6490-4894-8fdd-5d1b950d08bb
|
| scientificName |
Branchiosyllis exilis
|
| AphiaID |
131279
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S76
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTGGGGACGCCCTCTGTTGGTCCTGTGGGCAGACAGCTCCCGCAGCGCACTGCTGAGGGCTCCCAAGTGGCGGGGGGGCTCAGTGTTTCCCTCTTCACCGGGGGTGCTGTGGCCCTGCGCGAGCAGTCTCCGGTGTCATTGA
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Branchiosyllis exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"confidence": 1
}
]
}
|
| organismQuantity |
4.0
|
|