| Occurrences: |
view occurrences
| id |
4afa945b-3ca8-411c-930f-94e7ebe9b1a8
|
| scientificName |
Microcosmus
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-201
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103522",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
a9098344-ca04-4107-b33d-ccfdbb9616dc
|
| scientificName |
Microcosmus exasperatus
|
| AphiaID |
103838
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-201
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
737.0
|
| id |
099efad4-0e97-4134-8ca6-b882badd2132
|
| scientificName |
Microcosmus exasperatus
|
| AphiaID |
103838
|
| eventDate |
2024-02-28
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-91
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
49.0
|
|