Occurrences: |
view occurrences
id |
e1d3259e-68d0-4e8e-b055-0a0da7ecd70d
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-03
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1106.0
|
id |
8bf44f40-20b5-413e-812a-af8fba5e6b23
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-02
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
23.0
|
id |
d63f0c14-55b3-4b77-9de3-6c5ef5722ff8
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-06
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
13.0
|
id |
36c97154-d72c-47fd-87dd-275834ea456e
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-01
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
11.0
|
id |
227cfca2-ab6a-473d-b544-c7c715bceed2
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-05
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
6.0
|
id |
09af5450-f292-4ca3-aa5a-1196b7efc941
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-12
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2.0
|
id |
1c7cc6ff-4fd9-4f9c-8d23-165c32c7428f
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-08
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2.0
|
id |
0abb18fa-6bae-45d7-8003-7f0d9f9d211d
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-04
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
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"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
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"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
562ff628-56ff-4f63-b0a1-3b8f3a545c12
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-18
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
7c11c7ac-a246-4ae7-b596-082094f07779
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-07
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
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"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
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},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
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},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
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},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
8e35581e-4f8f-46ec-9634-cce3ca26ba56
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-13
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
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"scientificName": "Macrorhynchia phoenicea",
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"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
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},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
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"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
9bfaea7e-4718-451c-9740-80b483096a99
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-20
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
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"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
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"accession": "Z86122.1.1808_U",
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},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
a06ac013-8528-4f72-8523-c5ab8ea29fb2
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-15
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
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},
{
"method": "VSEARCH",
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"accession": "FJ550586.1.1685_U",
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},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
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"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
id |
b3a9188b-3d95-4966-a0b0-c9850ced354a
|
scientificName |
Macrorhynchia phoenicea
|
AphiaID |
284199
|
eventDate |
2023-04-27
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-11
|
target_gene |
18S
|
DNA_sequence |
TCGTTGGTTTCGAGGACCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATCTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Macrorhynchia phoenicea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284199",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Gymnangium_hians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220593",
"accession": "Z86122.1.1808_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Antennella_secundaria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117628",
"accession": "FJ550575.1.1716_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Macrorhynchia_sibogae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284204",
"accession": "FJ550586.1.1685_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Antennella_kiwiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:284814",
"accession": "FJ550534.1.1717_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Halopteris_carinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:287297",
"accession": "FJ550576.1.1717_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
1.0
|
|