| Occurrences: |
view occurrences
| id |
a758f1ac-78e8-466a-a05c-41f8b4b49050
|
| scientificName |
Loimia medusa
|
| AphiaID |
131499
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-17
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Loimia medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Loimia_medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"accession": "AY040690.1.1756_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lanice_conchilega",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131495",
"accession": "JN936470.1.1658_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
130.0
|
| id |
e08b038e-1145-4c4c-9f33-e7b741650e1e
|
| scientificName |
Loimia medusa
|
| AphiaID |
131499
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-11
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Loimia medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Loimia_medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"accession": "AY040690.1.1756_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lanice_conchilega",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131495",
"accession": "JN936470.1.1658_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
25.0
|
| id |
61e7389f-d770-4ec6-a601-940ce29e2974
|
| scientificName |
Loimia medusa
|
| AphiaID |
131499
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-19
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Loimia medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Loimia_medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"accession": "AY040690.1.1756_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lanice_conchilega",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131495",
"accession": "JN936470.1.1658_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
4.0
|
| id |
6edbfa00-5006-4ba1-915b-7b4197108767
|
| scientificName |
Loimia medusa
|
| AphiaID |
131499
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-03
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Loimia medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Loimia_medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"accession": "AY040690.1.1756_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lanice_conchilega",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131495",
"accession": "JN936470.1.1658_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
4.0
|
| id |
35bf18a8-859f-4c4c-a198-fcc684995bdb
|
| scientificName |
Loimia medusa
|
| AphiaID |
131499
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-16
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Loimia medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Loimia_medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"accession": "AY040690.1.1756_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lanice_conchilega",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131495",
"accession": "JN936470.1.1658_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
c58dc90c-8c17-472e-8de8-0ca6b2cd2284
|
| scientificName |
Loimia medusa
|
| AphiaID |
131499
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-18
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Loimia medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Loimia_medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"accession": "AY040690.1.1756_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lanice_conchilega",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131495",
"accession": "JN936470.1.1658_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
09c1690f-f9f9-4e36-bfc4-16e459af3ad8
|
| scientificName |
Loimia medusa
|
| AphiaID |
131499
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-07
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTCTGGAACTGGAGGTAATGATTGAGAGGGACTGCCGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Loimia medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Loimia_medusa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131499",
"accession": "AY040690.1.1756_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lanice_conchilega",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131495",
"accession": "JN936470.1.1658_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|