PacMAN decision support system

Potential detection of Obelia bidentata in Fiji

Description:

Potential detection of Obelia bidentata with confidence low on 2023-08-15 in material sample USP-24-01-57, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Obelia bidentata
Cnidaria > Hydrozoa > Leptothecata > Campanulariidae
WoRMS: 117385

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

2.0

Names:

Occurrences:

view occurrences

id	0a6176a5-6660-4682-95fc-a66cff1cb6cc
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-57
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGGGACTGGGGTGCGACGGTCAGCCTAACACTGGTCTGCACCGTCTCGCGCCACGGTCATCACATCTCCCAGAGGACCTGTCGTGTACTTAACTGTGCGCGGCATTCGGGACTCGGGACGTTTACTTTGAAAAAATTAGAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789754.1.1730_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	42439349-9ded-4ce7-9fa7-196194c0f75e
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-50
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAATTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789754.1.1730_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	35.0

id	14dbce28-6495-4a94-ba92-91c1f9ab1906
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-57
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAATTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789754.1.1730_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	cfe06a5e-f732-4958-af2f-259e784a7adb
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-49
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAATTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789754.1.1730_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	84df20b4-6211-4280-b78d-24d0d8829767
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-54
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	20.0

id	e5c05b22-7c12-4ccf-baca-64b15ec7a2d4
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-57
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	12.0

Obelia bidentata in Fiji

Status

Obelia bidentata does not have an offial status in Fiji.

Notes

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