| Occurrences: |
view occurrences
| id |
0a67ef83-31f3-4839-9ad6-4539683f672f
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S22
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2334.0
|
| id |
40617226-f40d-49f1-9e02-11d29db4255a
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S21
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
290.0
|
| id |
2aec6950-b90a-4d31-9f0b-f9e0350c5b9a
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S43
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
135.0
|
| id |
a7a97ef3-fd6d-4ecf-a397-09f385432eb5
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S12
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
b90dda62-4704-431d-a51a-b2ffd0704d48
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S9
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|