PacMAN decision support system

Potential detection of Branchiosyllis exilis in Fiji

Description:

Potential detection of Branchiosyllis exilis with confidence medium on 2023-08-24 in material sample USP-24-01-33, marker 18S

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Branchiosyllis exilis
Annelida > Polychaeta > Phyllodocida > Syllidae
WoRMS: 131279

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

15.0

Names:

Occurrences:

view occurrences

id	5374ad56-c17b-4990-8128-2c94d5bff79b
scientificName	Branchiosyllis exilis
AphiaID	131279
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-33
target_gene	18S
DNA_sequence	TGTTGGTCTTCGGAAGTCGAGATAATGATTAAGAGGGACAGACGGGGGCACTCGTACTGCGGCGTGAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Branchiosyllis exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Branchiosyllis_exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "accession": "JF903584.1.1886_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Branchiosyllis_sp.", "accession": "AF474283.1.1840_U", "identity": 0.975, "query_cover": 0.9938 } ] }
organismQuantity	15.0

id	0aba6c3e-085b-4ad0-96cf-f6c559a0c239
scientificName	Branchiosyllis exilis
AphiaID	131279
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-34
target_gene	18S
DNA_sequence	TGTTGGTCTTCGGAAGTCGAGATAATGATTAAGAGGGACAGACGGGGGCACTCGTACTGCGGCGTGAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Branchiosyllis exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Branchiosyllis_exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "accession": "JF903584.1.1886_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Branchiosyllis_sp.", "accession": "AF474283.1.1840_U", "identity": 0.975, "query_cover": 0.9938 } ] }
organismQuantity	6.0

id	354fe4d5-d4cc-4bd0-a62d-0abeeca0d99b
scientificName	Branchiosyllis exilis
AphiaID	131279
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-33
target_gene	18S
DNA_sequence	TGTTGGTCTTCGGAACCCGAGATAATGATTGAGAGGGACAGACGGGGGCACTTGTACTGCGGCGTGAGAGGTGAAATTCTTGGACCGTCGCAAGACAAACCCAGGCGAAAGCATTTGCCCAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Branchiosyllis exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Branchiosyllis_exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "accession": "JF903583.1.1887_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	5.0

id	78523bf4-cbbf-4519-9762-55c55bf17656
scientificName	Branchiosyllis exilis
AphiaID	131279
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-64
target_gene	18S
DNA_sequence	TGTTGGTCTTCGGAAGTCGAGATAATGATTAAGAGGGACAGACGGGGGCACTCGTACTGCGGCGTGAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Branchiosyllis exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Branchiosyllis_exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "accession": "JF903584.1.1886_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Branchiosyllis_sp.", "accession": "AF474283.1.1840_U", "identity": 0.975, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	b03ff692-3446-4926-9bc0-9d0b3b3e30e4
scientificName	Branchiosyllis exilis
AphiaID	131279
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-29
target_gene	18S
DNA_sequence	TGTTGGTCTTCGGAAGTCGAGATAATGATTAAGAGGGACAGACGGGGGCACTCGTACTGCGGCGTGAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Branchiosyllis exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Branchiosyllis_exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "accession": "JF903584.1.1886_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Branchiosyllis_sp.", "accession": "AF474283.1.1840_U", "identity": 0.975, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	e64e7571-053f-480a-92c5-61e4418519f5
scientificName	Branchiosyllis exilis
AphiaID	131279
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-33
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGACGCCCTCAGGCGGTCTCGCGGGCACAGGCCAAGTCCACCCGCGGTGCACTGCTGAGGGCTCCCCTCTGGCGGGGGGGCTCGCACACGCTGCGCGGCCCTGCGAGAGCAGTCGCCGGTGCCCTTGACTGGGCCGCC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Branchiosyllis exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "confidence": 1 } ] }
organismQuantity	15.0

id	d3acd88a-c9d6-4197-b694-28caa4ef3e1e
scientificName	Branchiosyllis exilis
AphiaID	131279
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-34
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGACGCCCTCAGGCGGTCTCGCGGGCACAGGCCAAGTCCACCCGCGGTGCACTGCTGAGGGCTCCCCTCTGGCGGGGGGGCTCGCACACGCTGCGCGGCCCTGCGAGAGCAGTCGCCGGTGCCCTTGACTGGGCCGCC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Branchiosyllis exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "confidence": 1 } ] }
organismQuantity	5.0

id	fa0136c2-4b74-4b00-aaf9-8ddfc3ea9221
scientificName	Branchiosyllis exilis
AphiaID	131279
eventDate	2023-08-24
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-33
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTGGGGACGCCCTCTGTTGGTCCTGTGGGCAGACAGCTCCCGCAGCGCACTGCTGAGGGCTCCCAAGTGGCGGGGGGGCTCAGTGTTTCCCTCTTCACCGGGGGTGCTGTGGCCCTGCGCGAGCAGTCTCCGGTGTCATTGA
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Branchiosyllis exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "confidence": 1 } ] }
organismQuantity	4.0

id	363ee414-0220-4044-b25a-5e30d5de0c6c
scientificName	Branchiosyllis exilis
AphiaID	131279
eventDate	2023-08-24
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-29
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGACGCCCTCAGGCGGTCTCGCGGGCACAGGCCAAGTCCACCCGCGGTGCACTGCTGAGGGCTCCCCTCTGGCGGGGGGGCTCGCACACGCTGCGCGGCCCTGCGAGAGCAGTCGCCGGTGCCCTTGACTGGGCCGCC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Branchiosyllis exilis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131279", "confidence": 1 } ] }
organismQuantity	1.0

Branchiosyllis exilis in Fiji

Status

Branchiosyllis exilis does not have an offial status in Fiji.

Notes

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No notes found.