| Occurrences: |
view occurrences
| id |
0b2743bf-29b3-4af0-9e3d-5646cf3f17d4
|
| scientificName |
Ostrea equestris
|
| AphiaID |
156924
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| eventID |
SUVA2_20230824_S2A
|
| materialSampleID |
USP-24-01-161
|
| target_gene |
COI
|
| DNA_sequence |
TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317498",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226522",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226523",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640081",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640082",
"identity": 0.997,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
900.0
|
| id |
89fefb3a-2e3a-473b-a91a-3e39f89628da
|
| scientificName |
Ostrea equestris
|
| AphiaID |
156924
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| eventID |
SUVA1_20230824_WA
|
| materialSampleID |
USP-24-01-125
|
| target_gene |
COI
|
| DNA_sequence |
TTTGTCAACTTTTTCGTACCATGGAATGTGTATAGACTTGGCAATTCTAAGGCTTCATTTAGCCGGGATTAGTTCAATTTTTAGATCAATTAATTTTATGGTCACAATTACAAATATGCGATCAGTAGACGGACATTTACTGGCTTTATTTCCGTGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAGGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"confidence": 0.99
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317498",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226522",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226523",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640081",
"identity": 0.997,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640082",
"identity": 0.997,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
15.0
|
| id |
842e3c12-597c-4065-8879-64e4794a60ee
|
| scientificName |
Ostrea equestris
|
| AphiaID |
156924
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| eventID |
SUVA2_20230824_S2A
|
| materialSampleID |
USP-24-01-161
|
| target_gene |
COI
|
| DNA_sequence |
TGATCAATTAAAGTAACATCATTTTTATTATTGACCACTCTGCCTGTACTAGCCGGAGGCTTAACTATACTACTTACAGATCGTCATTTTAATACATCTTTCTTTGATCCTGTAAGCGGTGGAGATCCTGTATTATTTCAGCATTTGTTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317498",
"identity": 0.993,
"query_cover": 0.9933
},
{
"method": "VSEARCH",
"scientificName": "Ostrea equestris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156924",
"accession": "KT317502",
"identity": 0.993,
"query_cover": 0.9933
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226522",
"identity": 0.993,
"query_cover": 0.9933
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ226523",
"identity": 0.993,
"query_cover": 0.9933
},
{
"method": "VSEARCH",
"scientificName": "Ostrea stentina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:489077",
"accession": "DQ640081",
"identity": 0.993,
"query_cover": 0.9933
}
]
}
|
| organismQuantity |
4.0
|
|