| Occurrences: |
view occurrences
| id |
0bfcbf4d-2401-4201-8386-1aeb4b6978b0
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S40
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGTCCTGGCCTCACCTCCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662245.1.957_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662236.1.1228_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
7.0
|
| id |
752b4013-8257-4d78-8168-79f4b2a45091
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S41
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGTCCTGGCCTCACCTCCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662245.1.957_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662236.1.1228_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
ccb35019-20bd-48d4-ad81-bd64f95feb74
|
| scientificName |
Ecteinascidia turbinata
|
| AphiaID |
103756
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S35
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGTCCTGGCCTCACCTCCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ecteinascidia turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662245.1.957_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662236.1.1228_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|