PacMAN decision support system

Potential detection of Ostrea edulis in Fiji

Description:

Potential detection of Ostrea edulis with confidence low on 2023-11-28 in material sample USP-24-01-75, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ostrea edulis
Mollusca > Bivalvia > Ostreida > Ostreidae
WoRMS: 140658 GISD: 798

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

0.995

Reads:

148.0

Names:

4

Occurrences:

view occurrences

id	a867a9eb-7826-48fd-afea-a6dc899dd52e
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-75
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.8 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	148.0

id	f02f0311-3690-4a05-8abb-90e3d21827b1
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-76
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.8 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	105.0

id	ace4b74e-8f27-42ef-a801-4b0aa9009214
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-73
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.8 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	92.0

id	ca4d0573-0fe1-4672-844a-1d4b5d791ccc
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-69
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.8 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	85.0

id	878f8252-3419-4103-853d-c92c0aa1f674
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-68
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.8 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	39.0

id	782dc8e3-22de-483f-a2f9-94eaf25a4820
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-67
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.8 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	36.0

id	d945030d-8a7f-42a8-af76-2faa1785a530
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-77
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.8 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	20.0

id	0c45344e-162d-4637-9b85-ccadd83c3186
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-74
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.8 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	5.0

id	f2f3bb18-812a-45d8-95cf-4bd143b098ad
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-78
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCCTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.8 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	52e70f01-a124-4522-9d79-51b5a0047b2d
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-73
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	10779.0

id	98806274-aaca-4845-aa6f-19c590b981ad
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-76
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	1911.0

id	fe06b19d-7fcd-4f75-9cb3-529e76e8d4f9
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-75
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	1420.0

id	ffccc126-0ddf-4013-9c9f-daf707555991
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-74
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	873.0

id	9a349e71-9577-4478-bb8b-5d5827001270
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-77
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	790.0

id	5b6293e6-f3f1-43ad-9101-034817b34808
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-78
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	581.0

id	26b56a8a-7b4f-47ff-8e2f-341364a54ab1
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-67
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	32.0

id	eceec27c-6543-49a6-a39f-29e016700cde
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-68
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	31.0

id	dd39edbd-1d30-4f29-b3e3-b556fe06abe8
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-69
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	16.0

id	c4a854d8-1aa3-472c-a5f4-4236c43ff737
scientificName	Magallana gigas
AphiaID	836033
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-90
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGCTGGATCTCGGGTCCAGGCTGGCGGTCCGCCTCGTTGCGGTCACTGCTTGTCCTGACCCAACCTCTCGGTTGTAAACCCTTGGTGCTCTTGACTGAGTTGCTTCGGGTGGCCGAAACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AB064942.1.1820_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "AFTI01027729.1.1382_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea edulis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140658", "accession": "EU660786.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Crassostrea gigas", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140656", "accession": "EU660790.1.875_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ostrea chilensis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397160", "accession": "EU660788.1.875_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	12.0

Ostrea edulis in Fiji

Status

Ostrea edulis does not have an offial status in Fiji.

Notes

No notes found.